# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	6.84e-07		
2icgA	160	1.13e-06		
2pagA	135	0.002280		
1h99A	224	5.286	a.142.1.1,a.142.1.1	60814,60815
1c3oA	1073	9.616	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18562,31491,31681,31682,41526,41527
1t9hA	307	11.78	b.40.4.5,c.37.1.8	112358,112359
1klpA	115	14.53	a.28.1.1	72721
2bkkA	264	14.58		
1t8kA	77	15.12	a.28.1.1	106666
2ahqA	76	15.95		
1tgoA	773	19.29	c.55.3.5,e.8.1.1	33721,43010
1l0iA	78	19.58	a.28.1.1	77643
1ro0A	216	19.83	d.264.1.2	97664
2oa2A	148	20.09		
1ro2A	216	20.47	d.264.1.2	97665
1qqcA	773	21.18	c.55.3.5,e.8.1.1	33724,43013
2chgA	226	21.48		
2z2nA	299	22.22		
3cnuA	116	22.62		
1tkeA	224	26.55	d.15.10.1,d.67.1.1	112470,112471
1ixcA	294	27.99	a.4.5.37,c.94.1.1	83764,83765
2cvkA	110	30.88		
1u79A	129	31.81	d.26.1.1	107714
3nul	130	34.62		
2yzuA	109	35.07		
1vp6A	138	36.83	b.82.3.2	113939
2g09A	297	39.05		
1dcjA	81	40.98	d.68.3.3	59115
2ehsA	77	41.75		
1je3A	97	43.08	d.68.3.3	71637
1u7eB	154	44.73		
1z5yE	149	45.16	c.47.1.10	124498
3bnyA	320	45.19		
1q7hA	153	46.42	b.122.1.1,d.17.6.2	96042,96043
2ivwA	113	47.54		
2ah5A	210	53.69	c.108.1.6	126742
1jc4A	148	55.12	d.32.1.4	62863
2qnwA	82	55.36		
1d1rA	116	55.75	d.64.1.1	39548
2j5aA	110	56.33		
2odtX	328	59.12		
1qndA	123	59.63	d.106.1.1	40794
2oqcA	327	60.13		
1rkqA	282	62.92	c.108.1.10	97621
1ihgA	370	64.28	a.118.8.1,b.62.1.1	62380,62381
1j9bA	141	66.33	c.47.1.12	66459
1trkA	680	67.84	c.36.1.10,c.36.1.6,c.48.1.1	31803,31804,33090
1dv5A	80	68.70	a.28.1.3	59139
1wloA	136	70.61		
1c44A	123	72.55	d.106.1.1	40795
1rxyA	253	73.38	c.56.2.1	98065
2c0dA	221	74.74		
1v5rA	97	75.04	d.82.4.1	119854
1thxA	115	75.61	c.47.1.1	32732
2b1kA	168	75.67		
2hszA	243	76.56	c.108.1.6	136726
1afqC	96	79.36		
1afcA	140	80.97	b.42.1.1	25506
1s3cA	141	81.45		
1te2A	226	81.74	c.108.1.6	106792
2fqxA	318	83.06		
1slqA	278	83.36	f.47.1.1	105719
2bw2A	140	87.94		
1kebA	108	88.12	c.47.1.1	77341
1w8gA	234	88.93