# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2icgA	160	1.48e-05		
2prvA	153	1.76e-05		
2pagA	135	0.01193		
2bkkA	264	12.64		
1slqA	278	16.44	f.47.1.1	105719
1ixcA	294	16.60	a.4.5.37,c.94.1.1	83764,83765
2ahqA	76	18.84		
2z2nA	299	18.91		
1h99A	224	23.23	a.142.1.1,a.142.1.1	60814,60815
2oa2A	148	26.62		
1t8kA	77	36.53	a.28.1.1	106666
1tkeA	224	36.65	d.15.10.1,d.67.1.1	112470,112471
2c0dA	221	37.62		
2g09A	297	41.27		
1t9hA	307	42.43	b.40.4.5,c.37.1.8	112358,112359
1bw3A	125	44.73	b.52.1.2	26899
3cnuA	116	46.56		
1u7eB	154	46.80		
2e11A	266	48.82		
1vp6A	138	49.10	b.82.3.2	113939
2amdA	311	49.39		
2z79A	185	51.01		
2i8lA	156	55.78		
1c44A	123	63.45	d.106.1.1	40795
1l0iA	78	64.28	a.28.1.1	77643
2bazA	142	64.68		
1je3A	97	66.97	d.68.3.3	71637
1j9bA	141	71.07	c.47.1.12	66459
2j5aA	110	71.87		
1tgoA	773	76.49	c.55.3.5,e.8.1.1	33721,43010
2fqxA	318	78.36		
2tbd	134	79.07		
1xmtA	103	80.46	d.108.1.1	115561
1kb9D	246	80.52	a.3.1.3,f.23.11.1	77317,77318
2coqA	108	81.04		
1m4lA	307	83.82	c.56.5.1	78604
1c3oA	1073	85.71	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18562,31491,31681,31682,41526,41527
1ro0A	216	85.98	d.264.1.2	97664
2q8nA	460	86.32