# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2icgA	160	7.85e-06		
2prvA	153	1.40e-05		
2pagA	135	0.01428		
2bkkA	264	12.13		
1h99A	224	14.41	a.142.1.1,a.142.1.1	60814,60815
2ahqA	76	15.25		
1slqA	278	15.29	f.47.1.1	105719
1ixcA	294	15.43	a.4.5.37,c.94.1.1	83764,83765
2z2nA	299	18.33		
2z79A	185	31.17		
2amdA	311	32.80		
1t8kA	77	33.30	a.28.1.1	106666
1tkeA	224	34.86	d.15.10.1,d.67.1.1	112470,112471
1bw3A	125	38.11	b.52.1.2	26899
2g09A	297	39.30		
2bazA	142	39.48		
1t9hA	307	44.47	b.40.4.5,c.37.1.8	112358,112359
1l0iA	78	47.97	a.28.1.1	77643
1u7eB	154	54.04		
1kb9D	246	54.18	a.3.1.3,f.23.11.1	77317,77318
2coqA	108	60.06		
2i8lA	156	60.52		
1je3A	97	61.38	d.68.3.3	71637
2c0dA	221	63.68		
1q3eA	207	64.02	b.82.3.2	95669
1vp6A	138	67.51	b.82.3.2	113939
2j5aA	110	67.68		
2oa2A	148	69.61		
2tbd	134	69.70		
2fqxA	318	76.67		
1j9bA	141	79.35	c.47.1.12	66459
1tgoA	773	79.76	c.55.3.5,e.8.1.1	33721,43010
1js3A	486	80.41	c.67.1.6	67215
2dcyA	185	82.81	b.29.1.11	131388
1ro2A	216	82.91	d.264.1.2	97665
1qqcA	773	85.34	c.55.3.5,e.8.1.1	33724,43013
1fadA	99	85.58	a.77.1.2	18428
1m1hA	248	86.54	b.114.1.1,d.58.42.1	78415,78416
2q8nA	460	87.86