# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2icgA	160	1.44e-05		
2prvA	153	4.58e-05		
2pagA	135	0.002253		
2ahqA	76	4.976		
2bkkA	264	12.89		
1tkeA	224	19.10	d.15.10.1,d.67.1.1	112470,112471
1s3cA	141	20.37		
1ixcA	294	23.24	a.4.5.37,c.94.1.1	83764,83765
1j9bA	141	26.66	c.47.1.12	66459
2j8qA	227	27.05		
2bazA	142	33.26		
1glqA	209	33.97	a.45.1.1,c.47.1.5	17588,32882
2ia1A	178	40.92		
1kxpD	458	43.64	a.126.1.1,a.126.1.1,a.126.1.1	73160,73161,73162
1tc1A	220	45.08	c.61.1.1	34083
3beyA	96	50.49		
2tbd	134	50.61		
1t8kA	77	52.06	a.28.1.1	106666
2chgA	226	53.87		
1c3oA	1073	55.29	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18562,31491,31681,31682,41526,41527
2da7A	71	55.66		
2j5aA	110	58.89		
1hcrA	52	60.45	a.4.1.2	16020
2b1kA	168	61.28		
3bqpA	80	61.88		
1kteA	105	63.41	c.47.1.1	32771
1j7gA	144	64.18	c.110.1.1	84130
1trkA	680	64.56	c.36.1.10,c.36.1.6,c.48.1.1	31803,31804,33090
1vp4A	425	65.41	c.67.1.1	113935
1rxqA	178	68.91	a.213.1.1	105118
1qqcA	773	72.58	c.55.3.5,e.8.1.1	33724,43013
2cy5A	140	74.38	b.55.1.2	131018
2f3nA	76	75.06	a.60.1.2	132885
1i0lA	221	75.63	c.61.1.1	71096
1zq1A	438	75.66	b.38.3.1,c.88.1.1	125489,125490
1bbpA	173	77.50	b.60.1.1	27147
1itzA	675	78.85	c.36.1.10,c.36.1.6,c.48.1.1	76797,76798,76799
1m1hA	248	87.01	b.114.1.1,d.58.42.1	78415,78416