# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2icgA	160	9.65e-06		
2prvA	153	2.05e-05		
2pagA	135	0.01010		
2bkkA	264	12.01		
1slqA	278	15.29	f.47.1.1	105719
1h99A	224	19.57	a.142.1.1,a.142.1.1	60814,60815
1ixcA	294	30.16	a.4.5.37,c.94.1.1	83764,83765
1tkeA	224	30.40	d.15.10.1,d.67.1.1	112470,112471
3cnuA	116	31.15		
1ro0A	216	33.51	d.264.1.2	97664
2z2nA	299	36.15		
1ro2A	216	37.32	d.264.1.2	97665
1t9hA	307	38.84	b.40.4.5,c.37.1.8	112358,112359
1t8kA	77	44.21	a.28.1.1	106666
2ahqA	76	44.76		
2bazA	142	45.80		
2e11A	266	46.79		
2tbd	134	47.57		
2j5aA	110	50.82		
1l0iA	78	51.06	a.28.1.1	77643
2z79A	185	51.99		
2oa2A	148	57.84		
2g09A	297	58.91		
1fadA	99	61.16	a.77.1.2	18428
2c0dA	221	62.58		
1je3A	97	65.66	d.68.3.3	71637
1c3oA	1073	65.89	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18562,31491,31681,31682,41526,41527
1sfeA	180	66.64	a.4.2.1,c.55.7.1	16073,33748
1vp6A	138	70.67	b.82.3.2	113939
3nul	130	72.72		
1eejA	216	74.50	c.47.1.9,d.17.3.1	33057,38071
1dcjA	81	77.00	d.68.3.3	59115
1u7eB	154	78.24		
1nd4A	264	81.25	d.144.1.6	91815
1kwmA	402	83.10	c.56.5.1,d.58.3.1	73079,73080
1e3yA	104	83.89	a.77.1.2	18426
2oqcA	327	83.97		
1q3eA	207	85.53	b.82.3.2	95669
1byqA	228	87.60	d.122.1.1	41100