# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2icgA 160 1.36e-07 2prvA 153 2.62e-07 2pagA 135 0.004375 2z2nA 299 2.306 2qe8A 343 2.930 1kbjA 412 3.268 c.1.4.1 72280 2rfmA 192 6.569 1klqA 197 8.013 d.135.1.1 68689 1xd3A 230 8.226 d.3.1.6 115145 2fncA 381 8.426 2j5aA 110 8.500 1u8fO 335 8.800 c.2.1.3,d.81.1.1 119626,119627 1anjA 446 9.217 c.76.1.1 35008 2bkkA 264 9.99 1fwrA 213 10.15 c.1.10.1 29164 1r9dA 787 10.40 c.7.1.1 104865 2bklA 695 10.58 1qyiA 384 11.52 c.108.1.13 96595 1glqA 209 11.61 a.45.1.1,c.47.1.5 17588,32882 2z79A 185 11.97 1rfzA 168 13.85 a.195.1.1 97411 1owqA 361 15.47 c.1.8.5,d.26.3.1 104041,104042 1uylA 236 16.31 d.122.1.1 108147 2cmuA 342 16.60 3be7A 408 16.71 1e6pA 499 17.99 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1rwiA 270 19.75 b.68.9.1 97987 1ixcA 294 22.13 a.4.5.37,c.94.1.1 83764,83765 1d4fA 431 22.44 c.2.1.4,c.23.12.3 30110,31370 2i8lA 156 22.73 1tkeA 224 22.78 d.15.10.1,d.67.1.1 112470,112471 1eejA 216 25.64 c.47.1.9,d.17.3.1 33057,38071 1ro2A 216 27.07 d.264.1.2 97665 2pcnA 161 27.95 1knxA 312 31.13 c.98.2.1,c.91.1.2 77459,77460 1x3lA 440 31.50 1byqA 228 31.52 d.122.1.1 41100 1dkiA 371 32.69 d.3.1.1 37090 2fj6A 82 33.60 a.60.15.1 133547 2p11A 231 33.79 2b5tI 432 34.60 e.1.1.1 127905 1i74A 309 34.87 c.107.1.1 61867 1u7eB 154 35.42 1ii2A 524 35.79 c.91.1.1,c.109.1.1 66146,66147 2e4uA 555 36.10 2d1cA 496 37.25 3bcxA 437 38.17 1e1aA 314 38.36 b.68.6.1 59155 2amdA 311 38.85 1v4pA 157 39.30 d.67.1.2 113533 1pvdA 537 40.89 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1hjxA 362 40.97 c.1.8.5,d.26.3.1 83512,83513 2hyxA 352 41.22 2tbd 134 42.51 2o0bA 450 42.69 1vp6A 138 42.79 b.82.3.2 113939 1t8kA 77 43.11 a.28.1.1 106666 2qa0A 519 43.82 1wpnA 188 44.66 c.107.1.1 114826 1kwmA 402 45.00 c.56.5.1,d.58.3.1 73079,73080 2okjA 504 45.05 1slqA 278 45.80 f.47.1.1 105719 1qf6A 642 47.32 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 3cnuA 116 47.49 1koe 172 48.61 1v6iA 232 49.22 b.29.1.1 100383 2fqxA 318 49.48 1jc4A 148 50.19 d.32.1.4 62863 2axtC 473 50.65 1zybA 232 50.78 a.4.5.4,b.82.3.2 125815,125816 2pnwA 380 50.99 1bqg 451 51.09 2odtX 328 51.39 1ooyA 481 52.06 c.124.1.3,c.124.1.2 93388,93389 1l0iA 78 52.37 a.28.1.1 77643 1oi4A 193 52.72 c.23.16.2 87047 1anf 370 53.11 2g5fA 450 55.30 d.161.1.1 134654 1b3rA 431 56.98 c.2.1.4,c.23.12.3 30106,31366 2om6A 235 57.90 3bkhA 268 58.63 1a0rB 340 60.00 b.69.4.1 27658 1q3eA 207 60.48 b.82.3.2 95669 2bazA 142 60.58 1qpcA 279 64.86 d.144.1.7 41685 2bo9A 308 65.40 c.56.5.1 128897 1j4aA 333 66.20 c.2.1.4,c.23.12.1 71502,71503 1ozhA 566 67.09 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1ytvA 366 68.33 c.94.1.1 124016 2ahqA 76 69.04 1w0dA 337 71.87 c.77.1.1 114060 1k8kC 372 72.40 b.69.4.1 68308 1ja1A 622 73.07 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2j1aA 150 73.71 1h0hA 977 73.80 b.52.2.2,c.81.1.1 76435,76436 1qhbA 596 79.94 a.111.1.2 19055 2oitA 434 80.06 2e1vA 454 80.62 1nbwB 117 80.65 c.51.3.2 80396 2hi2A 158 80.70 1tgoA 773 81.59 c.55.3.5,e.8.1.1 33721,43010 1h99A 224 82.30 a.142.1.1,a.142.1.1 60814,60815 3nul 130 83.11 1yer 228 84.99 2r6uA 148 85.25 2jbvA 546 86.42 1z5yE 149 86.46 c.47.1.10 124498 2jabA 136 88.21 1lr0A 129 88.41 d.212.1.1 74213 2b1kA 168 89.17