# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2icgA	160	1.25e-05		
2prvA	153	4.09e-05		
2pagA	135	0.02142		
2bkkA	264	13.69		
1h99A	224	19.19	a.142.1.1,a.142.1.1	60814,60815
1slqA	278	20.40	f.47.1.1	105719
1ixcA	294	22.01	a.4.5.37,c.94.1.1	83764,83765
2bazA	142	34.06		
1ro0A	216	36.03	d.264.1.2	97664
1t9hA	307	37.45	b.40.4.5,c.37.1.8	112358,112359
1ro2A	216	37.67	d.264.1.2	97665
1tkeA	224	37.90	d.15.10.1,d.67.1.1	112470,112471
2j5aA	110	40.16		
1t8kA	77	45.85	a.28.1.1	106666
2ahqA	76	47.25		
2z79A	185	49.05		
1l0iA	78	53.24	a.28.1.1	77643
1u7eB	154	53.87		
1vp6A	138	55.67	b.82.3.2	113939
2z2nA	299	55.77		
2g09A	297	60.02		
1fadA	99	71.58	a.77.1.2	18428
2tbd	134	72.32		
1q3eA	207	75.22	b.82.3.2	95669
1eejA	216	76.52	c.47.1.9,d.17.3.1	33057,38071
1je3A	97	79.59	d.68.3.3	71637
1glqA	209	80.32	a.45.1.1,c.47.1.5	17588,32882
1kb9D	246	82.58	a.3.1.3,f.23.11.1	77317,77318
3cnuA	116	85.56		
1klpA	115	86.45	a.28.1.1	72721
1c3oA	1073	86.50	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18562,31491,31681,31682,41526,41527
1e3yA	104	89.06	a.77.1.2	18426
2coqA	108	89.40