# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2icgA	160	1.85e-05		
2prvA	153	3.34e-05		
2pagA	135	0.01733		
2ahqA	76	11.65		
1h99A	224	11.81	a.142.1.1,a.142.1.1	60814,60815
2bkkA	264	15.46		
1ixcA	294	19.23	a.4.5.37,c.94.1.1	83764,83765
1slqA	278	21.91	f.47.1.1	105719
1t9hA	307	32.13	b.40.4.5,c.37.1.8	112358,112359
1qqcA	773	32.74	c.55.3.5,e.8.1.1	33724,43013
1l0iA	78	32.75	a.28.1.1	77643
1t8kA	77	32.80	a.28.1.1	106666
1tkeA	224	35.03	d.15.10.1,d.67.1.1	112470,112471
1ro2A	216	37.84	d.264.1.2	97665
1kb9D	246	40.03	a.3.1.3,f.23.11.1	77317,77318
1ro0A	216	46.49	d.264.1.2	97664
1dcjA	81	51.65	d.68.3.3	59115
1glqA	209	51.96	a.45.1.1,c.47.1.5	17588,32882
2g09A	297	54.98		
1klpA	115	55.06	a.28.1.1	72721
1d1rA	116	57.64	d.64.1.1	39548
1je3A	97	62.96	d.68.3.3	71637
1tgoA	773	67.23	c.55.3.5,e.8.1.1	33721,43010
2tbd	134	71.79		
2chgA	226	74.45		
2oa2A	148	78.66		
2j5aA	110	84.50