# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2icgA	160	2.42e-05		
2prvA	153	5.55e-05		
2pagA	135	0.02808		
1slqA	278	6.156	f.47.1.1	105719
1h99A	224	13.06	a.142.1.1,a.142.1.1	60814,60815
2g09A	297	16.72		
1ixcA	294	17.17	a.4.5.37,c.94.1.1	83764,83765
2ahqA	76	18.90		
2bkkA	264	21.18		
1qqcA	773	25.07	c.55.3.5,e.8.1.1	33724,43013
1l0iA	78	30.35	a.28.1.1	77643
1tkeA	224	31.12	d.15.10.1,d.67.1.1	112470,112471
1t8kA	77	33.57	a.28.1.1	106666
2tbd	134	43.35		
1ro0A	216	52.48	d.264.1.2	97664
1ro2A	216	55.14	d.264.1.2	97665
1tgoA	773	55.46	c.55.3.5,e.8.1.1	33721,43010
1klpA	115	58.11	a.28.1.1	72721
1je3A	97	59.65	d.68.3.3	71637
1t9hA	307	60.52	b.40.4.5,c.37.1.8	112358,112359
1zglP	249	62.04	b.1.1.1,b.1.1.2	125047,125048
1glqA	209	63.12	a.45.1.1,c.47.1.5	17588,32882
2j5aA	110	72.09		
1vp6A	138	72.53	b.82.3.2	113939
1u7eB	154	72.62		
1e3yA	104	75.93	a.77.1.2	18426
2oa2A	148	80.60		
1m4lA	307	82.09	c.56.5.1	78604
2bazA	142	83.37		
1dcjA	81	83.90	d.68.3.3	59115
1wloA	136	84.52		
1hcrA	52	85.41	a.4.1.2	16020
2i8lA	156	86.30