# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	2.10e-05		
2icgA	160	5.97e-05		
2pagA	135	0.01656		
1ixcA	294	10.36	a.4.5.37,c.94.1.1	83764,83765
2tbd	134	15.69		
1hp4A	512	17.09	c.1.8.6,d.92.2.1	61111,61112
2ahqA	76	18.00		
1ro2A	216	18.13	d.264.1.2	97665
1ro0A	216	21.19	d.264.1.2	97664
1m1hA	248	27.59	b.114.1.1,d.58.42.1	78415,78416
2h5cA	198	35.58	b.47.1.1	136145
2bkkA	264	45.00		
1y1uA	585	47.36		
1glqA	209	48.70	a.45.1.1,c.47.1.5	17588,32882
1l0iA	78	54.48	a.28.1.1	77643
2oi2A	292	57.34		
1tc1A	220	59.17	c.61.1.1	34083
1qqcA	773	61.88	c.55.3.5,e.8.1.1	33724,43013
1j9bA	141	67.97	c.47.1.12	66459
1kxpD	458	68.77	a.126.1.1,a.126.1.1,a.126.1.1	73160,73161,73162
1tkeA	224	71.85	d.15.10.1,d.67.1.1	112470,112471
1e3yA	104	72.23	a.77.1.2	18426
1wloA	136	74.49		
1d4xG	126	75.85	d.109.1.1	59109
3bqpA	80	76.05		
1ezoA	370	76.46	c.94.1.1	59539
1nm1G	125	78.79	d.109.1.1	80653
1hnnA	282	81.50	c.66.1.15	65895
2e11A	266	81.79		
2ehsA	77	84.55		
1t8kA	77	87.54	a.28.1.1	106666
2hqsA	415	89.11	b.68.4.1,c.51.2.1	136662,136663