# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pagA	135	0.000161		
2icgA	160	0.000531		
2prvA	153	0.02041		
2vebA	195	5.860		
1itzA	675	6.337	c.36.1.10,c.36.1.6,c.48.1.1	76797,76798,76799
2h8lA	252	7.744		
1nrjA	158	8.330	d.110.4.4	86124
1l8rA	101	8.522	a.6.1.4	73700
2d74B	148	11.98		
2qsrA	173	12.91		
1ywqA	200	14.24	d.90.1.1	124162
1m5yA	408	17.41	a.223.1.2,d.26.1.1,d.26.1.1	78664,78665,78666
2hyxA	352	20.22		
2blnA	305	21.20	b.46.1.1,c.65.1.1	128734,128735
1aj8A	371	22.87	a.103.1.1	18900
1kk8B	139	23.97	a.39.1.5	77430
1js3A	486	24.49	c.67.1.6	67215
2ahrA	259	25.71	a.100.1.10,c.2.1.6	126775,126776
2daxA	152	27.64		
2ia2A	265	28.28		
1unnC	115	28.55	d.240.1.1	99680
1iomA	377	29.14	a.103.1.1	83698
1gpuA	680	30.27	c.36.1.10,c.36.1.6,c.48.1.1	65454,65455,65456
1azo	232	36.22		
2gb3A	409	37.79	c.67.1.1	134903
1xk4A	93	40.77	a.39.1.2	122055
1vgmA	378	42.12		
2e7jA	371	42.97		
1zsqA	528	45.82	b.55.1.8,c.45.1.3	125616,125617
2q4kA	251	45.91	d.86.1.2	139864
2ifcA	385	46.11		
1tf1A	198	46.49	d.110.2.2	106826
1owcA	427	48.32	a.103.1.1	104039
2giaB	187	49.17	d.18.1.4	135222
1pzgA	331	62.44	c.2.1.5,d.162.1.1	95425,95426
2d0oB	125	64.77	c.51.3.2	131078
1a4pA	96	68.22	a.39.1.2	17176
2ibpA	409	69.70		
1ggzA	148	70.06	a.39.1.5	70176
1aoa	275	71.82		
2b8nA	429	72.27	c.118.1.1	128093
1r5jA	337	73.69	c.77.1.5	97097
1q67A	231	74.57	b.55.1.7	95960
1r6uA	437	75.84	c.26.1.1	97163
1vjrA	271	76.48	c.108.1.14	100832
1zt2B	212	80.18	a.262.1.1	125625
2f7lA	455	81.47		
1lu4A	136	82.51	c.47.1.10	91124
1n2fA	142	83.98	d.227.1.1	79853
1u6zA	513	83.99	a.211.1.5,c.55.1.8,c.55.1.8	119608,119609,119610
3cnuA	116	85.36		
1kn0A	212	85.39	d.50.1.3	77444
1eexB	224	89.21	c.51.3.1	33213
1uxyA	340	89.30	d.145.1.2,d.146.1.1	41748,41761
2hjjA	87	89.93