Best Alignments for T0401

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2prvA	1.8717e-18	2prvA/T0401-2prvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2icgA	6.9423e-17	2icgA/T0401-2icgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pagA	5.5293e-16	2pagA/T0401-2pagA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ukfA	9.7479e+00	1ukfA/T0401-1ukfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.3.1.10
1jfmA	1.5475e+01	1jfmA/T0401-1jfmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.19.1.1
2qneA	1.7327e+01	2qneA/T0401-2qneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2r7hA	2.3628e+01	2r7hA/T0401-2r7hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pulA	3.0624e+01	2pulA/T0401-2pulA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kcgC	3.3968e+01	1kcgC/T0401-1kcgC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.19.1.1
2fiaA	3.7261e+01	2fiaA/T0401-2fiaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
2fe7A	3.7426e+01	2fe7A/T0401-2fe7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
1yiqA	3.8882e+01	1yiqA/T0401-1yiqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c26A	4.0844e+01	3c26A/T0401-3c26A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jyoA	4.1469e+01	1jyoA/T0401-1jyoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zjkA	4.4184e+01	1zjkA/T0401-1zjkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.47.1.2 g.18.1.1 g.18.1.1
2pbiB	4.4632e+01	2pbiB/T0401-2pbiB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1f1mA	4.5790e+01	1f1mA/T0401-1f1mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kv9A	4.9282e+01	1kv9A/T0401-1kv9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gnqA	4.9757e+01	2gnqA/T0401-2gnqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1cqmA	5.1293e+01	1cqmA/T0401-1cqmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.14.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001