# List of top-scoring protein chains for T0401.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	1.40e-08		
2pagA	135	8.17e-06		
2icgA	160	0.000332		
2h9bA	312	5.443		
2eoaA	177	17.71		
1hy3A	294	21.98	c.37.1.5	71090
1g3mA	294	21.99	c.37.1.5	83268
2d5cA	263	22.68		
1nsaA	395	44.63	c.56.5.1,d.58.3.1	33825,39066
1i12A	160	56.29	d.108.1.1	61515
1i1dA	161	56.51	d.108.1.1	61526
1i21A	159	56.61	d.108.1.1	61549
1j3bA	529	59.73	c.91.1.1,c.109.1.1	77071,77072
1tk1A	260	62.26	d.248.1.1	107066
1tklA	326	66.63	d.248.1.1	107105
1txnA	328	66.69	d.248.1.1	112779
1izdA	323	70.90	b.50.1.2	83839
3b8aX	485	73.74		
1i6vA	314	75.06	d.74.3.1,d.181.1.1	61852,61853
1ynjA	314	76.53	d.74.3.1,d.181.1.1	123737,123738
2oz4L	214	79.70		
1d2sA	170	80.56	b.29.1.4	24221
2nloA	302	81.99		
1e4xL	214	81.99	b.1.1.1,b.1.1.2	59240,59241
1clzL	219	85.88	b.1.1.1,b.1.1.2	20104,21136
1ynpA	317	87.08