# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	2.44e-16		
2icgA	160	8.85e-16		
2pagA	135	2.42e-14		
1ukfA	188	3.663	d.3.1.10	99488
2qneA	495	8.019		
1jfmA	174	9.131	d.19.1.1	66640
2pulA	397	9.538		
1xl7A	612	11.42	c.43.1.3,c.43.1.3	115438,115439
2r7hA	177	14.62		
1zjkA	403	19.54	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1gheA	177	21.68	d.108.1.1	76222
2fiaA	162	22.00	d.108.1.1	133514
3c26A	266	24.44		
2fe7A	166	26.52	d.108.1.1	133325
1cqmA	101	29.63	d.58.14.1	39321
1vzqH	250	29.97		
1kcgC	178	33.15	d.19.1.1	68440
1on0A	158	36.37	d.108.1.1	87095
2ahqA	76	37.01		
2cf8H	257	40.19		
2b5aA	77	41.34	a.35.1.3	127882
1h2iA	209	43.33	d.50.1.3	76550
2qa1A	500	43.96		
1kk8B	139	45.51	a.39.1.5	77430
2olgA	278	45.59		
2gnqA	336	46.94		
2qcuA	501	48.36		
1utxA	66	48.51	a.35.1.3	108034
1y7yA	74	48.59	a.35.1.3	122729
2pgbB	259	49.86		
1adrA	76	50.23	a.35.1.2	17042
1y9qA	192	51.49	a.35.1.8,b.82.1.15	116592,116593
1svjA	156	51.75	d.220.1.1	106049
1yreA	197	52.40	d.108.1.1	123919
1elvA	333	54.61	b.47.1.2,g.18.1.1	59454,59455
2i6cA	160	57.09	d.108.1.1	137095
2bvrH	252	57.17		
2o5cA	659	58.66		
1r5mA	425	58.89		
1senA	164	59.95	c.47.1.1	105465
2ehsA	77	60.91		
2fsrA	195	63.62	d.108.1.1	134036
2j5aA	110	65.78		
1xweA	151	67.85	b.40.3.3	116125
1ig0A	319	68.12	b.82.6.1,c.100.1.1	62354,62355
1t8kA	77	68.55	a.28.1.1	106666
1h99A	224	68.56	a.142.1.1,a.142.1.1	60814,60815
1xuqA	212	68.97		
1b0nA	111	71.72	a.34.1.1,a.35.1.3	17001,17064
2djkA	133	74.55	c.47.1.2	131548
2pbiB	354	74.66		
1kb9A	431	75.98	d.185.1.1,d.185.1.1	77311,77312
1gotB	340	76.85	b.69.4.1	27648
2qxvA	361	79.07		
1h8dH	260	81.11		
1knwA	425	81.63	b.49.2.3,c.1.6.1	90969,90970
1rkqA	282	81.77	c.108.1.10	97621
1uqwA	509	81.89	c.94.1.1	99799
1c0pA	363	82.16	c.4.1.2,d.16.1.3	30647,37934
2oqeA	660	82.80	b.30.2.1,d.17.2.1,d.17.2.1	139222,139223,139224
1vkuA	100	86.28	a.28.1.1	108690
1zwyA	185	86.86	c.51.4.3	125753
2b8nA	429	87.14	c.118.1.1	128093
1ix9A	205	87.15	a.2.11.1,d.44.1.1	76899,76900
1ofcX	304	88.30	a.4.1.3,a.4.1.13,a.187.1.1	92826,92827,92828
2qnwA	82	88.44