# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	1.13e-15		
2icgA	160	4.75e-15		
2pagA	135	1.67e-13		
1ukfA	188	3.435	d.3.1.10	99488
2qneA	495	9.660		
2fe7A	166	11.44	d.108.1.1	133325
1jfmA	174	14.33	d.19.1.1	66640
2pulA	397	17.50		
2r7hA	177	17.95		
2oqeA	660	18.98	b.30.2.1,d.17.2.1,d.17.2.1	139222,139223,139224
3c26A	266	19.50		
1zjkA	403	21.76	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1cqmA	101	24.60	d.58.14.1	39321
1vzqH	250	25.04		
2cf8H	257	26.94		
2pbiB	354	27.21		
2fiaA	162	27.32	d.108.1.1	133514
2ahqA	76	27.90		
1xweA	151	28.69	b.40.3.3	116125
1elvA	333	31.20	b.47.1.2,g.18.1.1	59454,59455
1kcgC	178	31.35	d.19.1.1	68440
1xl7A	612	31.36	c.43.1.3,c.43.1.3	115438,115439
1gheA	177	36.00	d.108.1.1	76222
1gotB	340	36.51	b.69.4.1	27648
2qa1A	500	37.55		
2olgA	278	40.21		
1kk8B	139	41.70	a.39.1.5	77430
2qcuA	501	43.02		
2pgbB	259	44.17		
2bvrH	252	46.28		
2gnqA	336	50.50		
2j5aA	110	51.83		
1jdc	429	52.33		
1yreA	197	54.89	d.108.1.1	123919
1on0A	158	58.58	d.108.1.1	87095
1adrA	76	59.48	a.35.1.2	17042
1bsmA	201	60.31	a.2.11.1,d.44.1.1	15780,38743
1rkqA	282	60.93	c.108.1.10	97621
1xuqA	212	61.05		
1n9eA	787	62.33	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
2b5aA	77	62.60	a.35.1.3	127882
1h8dH	260	65.73		
1ix9A	205	67.13	a.2.11.1,d.44.1.1	76899,76900
1ursA	402	68.83	c.94.1.1	99833
1u7lA	392	71.77	e.57.1.1	113093
1utxA	66	75.49	a.35.1.3	108034
2iciA	227	79.92		
1go4A	205	80.35	d.135.1.1	70292
1ig0A	319	80.58	b.82.6.1,c.100.1.1	62354,62355
1fx7A	230	80.95	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2pm7B	297	81.31		
2prbA	196	81.56		
1g2rA	100	82.93	d.192.1.1	60231
1y7yA	74	85.59	a.35.1.3	122729