# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2prvA 153 1.32e-17 2icgA 160 6.85e-17 2pagA 135 3.24e-15 2qneA 495 1.318 2qcuA 501 4.863 1rkqA 282 6.341 c.108.1.10 97621 1jfmA 174 8.205 d.19.1.1 66640 3c26A 266 8.386 1svjA 156 10.10 d.220.1.1 106049 1ukfA 188 10.10 d.3.1.10 99488 2fe7A 166 10.51 d.108.1.1 133325 2r7hA 177 13.60 2i6cA 160 18.55 d.108.1.1 137095 1zjkA 403 18.66 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1kcgC 178 20.70 d.19.1.1 68440 1a6zA 275 21.69 b.1.1.2,d.19.1.1 20781,38280 2qa1A 500 22.47 1xl7A 612 22.81 c.43.1.3,c.43.1.3 115438,115439 1senA 164 23.55 c.47.1.1 105465 1ix9A 205 24.03 a.2.11.1,d.44.1.1 76899,76900 1gheA 177 24.21 d.108.1.1 76222 2fiaA 162 24.53 d.108.1.1 133514 2pgbB 259 24.63 1xuqA 212 28.15 2d5lA 706 29.16 1c0pA 363 30.34 c.4.1.2,d.16.1.3 30647,37934 2fsrA 195 30.95 d.108.1.1 134036 1cqmA 101 33.34 d.58.14.1 39321 1g2rA 100 33.81 d.192.1.1 60231 2cf8H 257 33.99 1a8y 367 34.16 1utxA 66 34.59 a.35.1.3 108034 1vzqH 250 35.56 2dtvA 397 35.82 2djkA 133 37.33 c.47.1.2 131548 2bvrH 252 37.51 1adrA 76 37.78 a.35.1.2 17042 2yvtA 260 37.85 1anfA 370 40.00 c.94.1.1 35776 2b5aA 77 40.08 a.35.1.3 127882 2pulA 397 40.68 2ehsA 77 42.81 1h99A 224 43.09 a.142.1.1,a.142.1.1 60814,60815 2ahqA 76 43.67 1fx7A 230 45.02 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1vflA 356 45.28 c.1.9.1 120041 2evrA 246 45.34 b.34.11.3,d.3.1.16 132440,132441 1m6sA 347 47.78 c.67.1.1 78701 1a99A 344 48.16 c.94.1.1 35812 2rcvA 202 48.41 2qe8A 343 49.03 1y7yA 74 50.04 a.35.1.3 122729 2yhxA 457 51.55 i.12.1.1 46024 2prbA 196 52.24 2j5aA 110 52.50 2olgA 278 52.66 1t8kA 77 52.97 a.28.1.1 106666 1xweA 151 53.52 b.40.3.3 116125 1kk8B 139 53.62 a.39.1.5 77430 1r5mA 425 53.66 1yreA 197 53.80 d.108.1.1 123919 1k94A 165 55.48 a.39.1.8 68333 1h2eA 207 55.84 c.60.1.1 70857 2f9zC 159 58.87 1go4A 205 60.98 d.135.1.1 70292 1y9qA 192 61.69 a.35.1.8,b.82.1.15 116592,116593 1ursA 402 63.84 c.94.1.1 99833 2p9wA 334 65.27 2qnwA 82 66.76 1elvA 333 67.17 b.47.1.2,g.18.1.1 59454,59455 3ce7A 107 69.42 1q7hA 153 74.70 b.122.1.1,d.17.6.2 96042,96043 2da7A 71 75.79 1h8dH 260 76.09 1kl1A 419 76.16 c.67.1.4 72663 1g62A 224 76.52 d.126.1.1 41128 2ozhA 142 77.96 1ig0A 319 78.57 b.82.6.1,c.100.1.1 62354,62355 2hbwA 235 79.04 2cntA 160 79.59 1vkuA 100 80.11 a.28.1.1 108690 3bpzA 202 80.23 1nkqA 259 80.96 d.177.1.1 103862 1b0nA 111 83.12 a.34.1.1,a.35.1.3 17001,17064 1grjA 158 85.08 a.2.1.1,d.26.1.2 15691,38433 2fckA 181 85.64 d.108.1.1 133272 1barA 140 86.71 b.42.1.1 25504 2zg5A 397 87.52 2ofcA 142 89.05 2b8nA 429 89.12 c.118.1.1 128093 1u7lA 392 89.72 e.57.1.1 113093