# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	3.40e-15		
2icgA	160	6.69e-14		
2pagA	135	8.24e-13		
1ukfA	188	3.023	d.3.1.10	99488
2r7hA	177	8.544		
2qneA	495	10.35		
1jfmA	174	10.95	d.19.1.1	66640
2pulA	397	12.09		
2qa1A	500	12.30		
3c26A	266	12.62		
2qcuA	501	14.34		
1xl7A	612	16.62	c.43.1.3,c.43.1.3	115438,115439
2fe7A	166	17.25	d.108.1.1	133325
1rkqA	282	19.31	c.108.1.10	97621
1yreA	197	21.07	d.108.1.1	123919
2fiaA	162	22.73	d.108.1.1	133514
2i6cA	160	23.73	d.108.1.1	137095
2b5aA	77	33.22	a.35.1.3	127882
1c0pA	363	34.34	c.4.1.2,d.16.1.3	30647,37934
2d5lA	706	34.38		
1svjA	156	39.26	d.220.1.1	106049
1y9qA	192	39.49	a.35.1.8,b.82.1.15	116592,116593
2qe8A	343	39.81		
1gheA	177	39.88	d.108.1.1	76222
1kcgC	178	40.69	d.19.1.1	68440
1on0A	158	43.70	d.108.1.1	87095
1zjkA	403	45.22	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1yfqA	342	45.75	b.69.4.2	116680
2pbiB	354	47.86		
1cqmA	101	50.92	d.58.14.1	39321
2ahqA	76	53.72		
1eejA	216	54.25	c.47.1.9,d.17.3.1	33057,38071
1a6zA	275	55.81	b.1.1.2,d.19.1.1	20781,38280
1y7yA	74	57.58	a.35.1.3	122729
1gotB	340	57.64	b.69.4.1	27648
1vflA	356	57.88	c.1.9.1	120041
1txgA	335	59.97	a.100.1.6,c.2.1.6	112775,112776
3cnuA	116	60.86		
2gnqA	336	62.69		
1vzqH	250	63.65		
1ofcX	304	63.73	a.4.1.3,a.4.1.13,a.187.1.1	92826,92827,92828
1xweA	151	64.68	b.40.3.3	116125
2fsrA	195	66.02	d.108.1.1	134036
1utxA	66	66.48	a.35.1.3	108034
1xuqA	212	66.74		
2qxvA	361	69.44		
1ix9A	205	71.06	a.2.11.1,d.44.1.1	76899,76900
1kk8B	139	76.19	a.39.1.5	77430
1z2wA	192	78.03	d.159.1.7	124390
2bvrH	252	81.97		
1senA	164	84.18	c.47.1.1	105465
2j5aA	110	84.67		
1gxrA	337	85.14	b.69.4.1	70722
1r5mA	425	87.17		
2evrA	246	87.47	b.34.11.3,d.3.1.16	132440,132441
1g2rA	100	87.66	d.192.1.1	60231
1h99A	224	88.05	a.142.1.1,a.142.1.1	60814,60815
1i1qB	192	88.05	c.23.16.1	61544
1barA	140	88.55	b.42.1.1	25504