# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	1.26e-15		
2icgA	160	3.17e-14		
2pagA	135	3.38e-13		
1ukfA	188	2.754	d.3.1.10	99488
2r7hA	177	8.121		
2qneA	495	9.173		
2pulA	397	11.12		
2qa1A	500	12.35		
1jfmA	174	14.21	d.19.1.1	66640
2fe7A	166	15.35	d.108.1.1	133325
2qcuA	501	18.03		
1xl7A	612	23.72	c.43.1.3,c.43.1.3	115438,115439
3c26A	266	24.71		
1rkqA	282	25.25	c.108.1.10	97621
2fiaA	162	28.05	d.108.1.1	133514
1yreA	197	29.32	d.108.1.1	123919
1gheA	177	30.82	d.108.1.1	76222
1vflA	356	34.85	c.1.9.1	120041
1on0A	158	36.28	d.108.1.1	87095
1eejA	216	38.25	c.47.1.9,d.17.3.1	33057,38071
1kcgC	178	39.02	d.19.1.1	68440
2ahqA	76	40.67		
2i6cA	160	40.85	d.108.1.1	137095
2b5aA	77	40.89	a.35.1.3	127882
1svjA	156	43.23	d.220.1.1	106049
1kk8B	139	43.42	a.39.1.5	77430
2gnqA	336	43.84		
1cqmA	101	48.80	d.58.14.1	39321
1zjkA	403	49.28	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1c0pA	363	49.99	c.4.1.2,d.16.1.3	30647,37934
1vzqH	250	53.77		
1txgA	335	56.85	a.100.1.6,c.2.1.6	112775,112776
1n9eA	787	58.21	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
1ofcX	304	58.64	a.4.1.3,a.4.1.13,a.187.1.1	92826,92827,92828
1ix9A	205	60.50	a.2.11.1,d.44.1.1	76899,76900
1y7yA	74	60.67	a.35.1.3	122729
1xuqA	212	64.20		
1y9qA	192	64.76	a.35.1.8,b.82.1.15	116592,116593
1utxA	66	68.30	a.35.1.3	108034
2pbiB	354	68.68		
2olgA	278	69.87		
2fsrA	195	70.95	d.108.1.1	134036
2b5eA	504	72.01	c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2	127888,127889,127890,127891
2d5lA	706	73.65		
1gotB	340	73.75	b.69.4.1	27648
1k94A	165	80.33	a.39.1.8	68333
2j5aA	110	81.40		
2bvrH	252	82.24		
2djkA	133	82.37	c.47.1.2	131548
1a6zA	275	83.44	b.1.1.2,d.19.1.1	20781,38280
1xweA	151	84.79	b.40.3.3	116125
1h99A	224	85.67	a.142.1.1,a.142.1.1	60814,60815
1ig0A	319	86.07	b.82.6.1,c.100.1.1	62354,62355
2uxyA	341	86.40		
2pgbB	259	87.05		
2cf8H	257	89.29