# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	4.79e-16		
2icgA	160	1.39e-14		
2pagA	135	2.41e-13		
1ukfA	188	3.238	d.3.1.10	99488
1xl7A	612	7.322	c.43.1.3,c.43.1.3	115438,115439
2r7hA	177	9.745		
2qneA	495	10.71		
2pulA	397	11.21		
2qcuA	501	11.56		
1jfmA	174	12.02	d.19.1.1	66640
2fe7A	166	15.06	d.108.1.1	133325
2qa1A	500	15.97		
1rkqA	282	18.00	c.108.1.10	97621
1eejA	216	27.00	c.47.1.9,d.17.3.1	33057,38071
1kcgC	178	35.49	d.19.1.1	68440
2fiaA	162	35.67	d.108.1.1	133514
3c26A	266	35.82		
2i6cA	160	38.66	d.108.1.1	137095
2gnqA	336	39.85		
1vflA	356	41.35	c.1.9.1	120041
1c0pA	363	43.03	c.4.1.2,d.16.1.3	30647,37934
1yreA	197	44.16	d.108.1.1	123919
1kk8B	139	45.84	a.39.1.5	77430
1ofcX	304	46.39	a.4.1.3,a.4.1.13,a.187.1.1	92826,92827,92828
1on0A	158	48.21	d.108.1.1	87095
1gheA	177	48.51	d.108.1.1	76222
2b5aA	77	48.61	a.35.1.3	127882
2qxvA	361	48.64		
1svjA	156	50.13	d.220.1.1	106049
1txgA	335	51.04	a.100.1.6,c.2.1.6	112775,112776
1zjkA	403	51.30	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1vzqH	250	51.57		
2ahqA	76	54.80		
1cqmA	101	56.00	d.58.14.1	39321
1y7yA	74	62.22	a.35.1.3	122729
1n9eA	787	63.83	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
2b5eA	504	65.95	c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2	127888,127889,127890,127891
2d5lA	706	67.55		
2bvrH	252	68.62		
1utxA	66	68.87	a.35.1.3	108034
1xuqA	212	69.22		
2uxyA	341	70.58		
2pbiB	354	71.59		
2cf8H	257	75.35		
1ix9A	205	75.52	a.2.11.1,d.44.1.1	76899,76900
1uqwA	509	75.57	c.94.1.1	99799
2uz1A	563	80.01		
1gotB	340	81.35	b.69.4.1	27648
1adrA	76	81.78	a.35.1.2	17042
2o2xA	218	82.80		
1uf5A	303	83.15	d.160.1.2	107808
1a6zA	275	85.89	b.1.1.2,d.19.1.1	20781,38280
2pgbB	259	86.69		
2j8sA	1055	86.73		
2ehsA	77	86.77		
1yfqA	342	86.89	b.69.4.2	116680
2iciA	227	89.79