# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	2.60e-16		
2icgA	160	5.23e-15		
2pagA	135	4.29e-14		
2qneA	495	3.764		
2gnqA	336	10.44		
1ukfA	188	11.12	d.3.1.10	99488
2ahqA	76	12.64		
1i1qB	192	13.92	c.23.16.1	61544
1on0A	158	14.58	d.108.1.1	87095
1s4uX	407	15.23	b.69.4.1	112027
2yhxA	457	17.70	i.12.1.1	46024
1tkeA	224	18.88	d.15.10.1,d.67.1.1	112470,112471
1utxA	66	19.33	a.35.1.3	108034
1ix9A	205	23.55	a.2.11.1,d.44.1.1	76899,76900
2pbiB	354	23.86		
2r7hA	177	24.57		
2h14A	317	27.53		
2qkiC	343	27.94		
2fe7A	166	28.16	d.108.1.1	133325
1adrA	76	29.19	a.35.1.2	17042
2djkA	133	29.65	c.47.1.2	131548
2r1iA	172	32.14		
2da7A	71	32.41		
1cqmA	101	32.50	d.58.14.1	39321
1yvkA	163	34.15	d.108.1.1	124101
1ik9A	213	34.46	b.59.1.1,h.1.11.1	66176,66177
1y7yA	74	34.65	a.35.1.3	122729
2qe8A	343	35.35		
2b5aA	77	36.53	a.35.1.3	127882
2fiaA	162	38.85	d.108.1.1	133514
1gotB	340	41.51	b.69.4.1	27648
1ofcX	304	43.92	a.4.1.3,a.4.1.13,a.187.1.1	92826,92827,92828
1xuqA	212	44.21		
2j5aA	110	44.62		
1b0nA	111	46.05	a.34.1.1,a.35.1.3	17001,17064
1tr9A	341	47.16	c.1.8.7	112617
1r5mA	425	49.57		
2ozhA	142	50.17		
1fadA	99	50.55	a.77.1.2	18428
1thtA	305	51.08	c.69.1.13	34711
1crzA	403	52.97	b.68.4.1,c.51.2.1	27629,33211
3ce7A	107	53.81		
2i6cA	160	58.26	d.108.1.1	137095
2qjwA	176	59.67		
1yfqA	342	60.53	b.69.4.2	116680
1zjkA	403	63.03	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2outA	131	65.58		
1c0pA	363	66.26	c.4.1.2,d.16.1.3	30647,37934
2ebsA	789	67.36		
2ehsA	77	70.74		
2d5lA	706	71.21		
2gcgA	330	71.78		
2qcuA	501	71.88		
2hszA	243	75.67	c.108.1.6	136726
1rkqA	282	76.90	c.108.1.10	97621
1dykA	394	78.23	b.29.1.4,b.29.1.4	24223,24224
1u6tA	121	78.69		
1kk8B	139	78.97	a.39.1.5	77430
1gxrA	337	80.79	b.69.4.1	70722
2yhx	457	84.79		
1y7qA	98	86.04	a.28.3.2	122714
1kcgC	178	86.97	d.19.1.1	68440
1jfmA	174	87.11	d.19.1.1	66640
2hi0A	240	87.37		
2bcjB	340	87.66	b.69.4.1	128289
1bsmA	201	88.44	a.2.11.1,d.44.1.1	15780,38743
2cx1A	187	88.75	b.122.1.1,d.17.6.4	130967,130968
1t8kA	77	88.79	a.28.1.1	106666