# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	3.19e-16		
2icgA	160	1.97e-15		
2pagA	135	4.17e-14		
1ukfA	188	3.921	d.3.1.10	99488
3c26A	266	4.402		
2fiaA	162	4.873	d.108.1.1	133514
2r7hA	177	8.239		
2ozhA	142	9.223		
1gheA	177	10.21	d.108.1.1	76222
1rkqA	282	10.62	c.108.1.10	97621
1jfmA	174	11.48	d.19.1.1	66640
2pulA	397	13.53		
2pbiB	354	13.71		
1xl7A	612	18.08	c.43.1.3,c.43.1.3	115438,115439
1yvkA	163	18.42	d.108.1.1	124101
2fe7A	166	18.78	d.108.1.1	133325
2qa1A	500	20.75		
2qneA	495	21.53		
2i6cA	160	21.73	d.108.1.1	137095
1on0A	158	23.76	d.108.1.1	87095
1gotB	340	25.83	b.69.4.1	27648
1cqmA	101	31.07	d.58.14.1	39321
1yreA	197	32.28	d.108.1.1	123919
1y9qA	192	33.78	a.35.1.8,b.82.1.15	116592,116593
1n9eA	787	37.49	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
2oqeA	660	38.30	b.30.2.1,d.17.2.1,d.17.2.1	139222,139223,139224
1xuqA	212	41.19		
1a6zA	275	42.80	b.1.1.2,d.19.1.1	20781,38280
1q2yA	140	44.31	d.108.1.1	95655
2fsrA	195	46.07	d.108.1.1	134036
1yfqA	342	46.15	b.69.4.2	116680
2qxvA	361	47.44		
1r5mA	425	47.55		
2qcuA	501	47.66		
1zjkA	403	50.46	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1utxA	66	50.67	a.35.1.3	108034
2djkA	133	51.33	c.47.1.2	131548
2b5aA	77	51.68	a.35.1.3	127882
1xebA	150	53.74	d.108.1.1	115219
1vzqH	250	56.66		
2gnqA	336	57.76		
1y7yA	74	59.10	a.35.1.3	122729
1kcgC	178	59.29	d.19.1.1	68440
2bvrH	252	59.51		
1g2rA	100	59.64	d.192.1.1	60231
1ix9A	205	62.17	a.2.11.1,d.44.1.1	76899,76900
2j5aA	110	62.44		
2prbA	196	64.20		
1eejA	216	65.22	c.47.1.9,d.17.3.1	33057,38071
2d51A	406	65.30		
2qe8A	343	65.77		
2ft0A	235	67.08		
1ofcX	304	67.23	a.4.1.3,a.4.1.13,a.187.1.1	92826,92827,92828
1s7kA	182	68.53	d.108.1.1	118878
2fiwA	172	73.00	d.108.1.1	133539
1fadA	99	74.68	a.77.1.2	18428
1xweA	151	75.60	b.40.3.3	116125
1go4A	205	75.84	d.135.1.1	70292
1s4uX	407	76.12	b.69.4.1	112027
1jdc	429	76.46		
1knwA	425	76.57	b.49.2.3,c.1.6.1	90969,90970
1rg9A	383	77.46	d.130.1.1,d.130.1.1,d.130.1.1	97427,97428,97429
1b0nA	111	78.30	a.34.1.1,a.35.1.3	17001,17064
1dykA	394	81.23	b.29.1.4,b.29.1.4	24223,24224
1senA	164	82.71	c.47.1.1	105465
2rcvA	202	86.98		
2pgbB	259	87.55		
1kb9A	431	87.76	d.185.1.1,d.185.1.1	77311,77312
2olgA	278	89.29