# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2prvA 153 3.15e-19 2icgA 160 2.85e-17 2pagA 135 1.39e-15 1ukfA 188 2.376 d.3.1.10 99488 1qwoA 442 2.904 c.60.1.2 104620 1hzoA 271 4.324 e.3.1.1 71092 3c26A 266 4.972 2fiaA 162 8.143 d.108.1.1 133514 1eejA 216 8.261 c.47.1.9,d.17.3.1 33057,38071 2r7hA 177 8.435 1xl7A 612 9.876 c.43.1.3,c.43.1.3 115438,115439 2fprA 176 10.06 c.108.1.19 133919 1y9qA 192 10.62 a.35.1.8,b.82.1.15 116592,116593 2pulA 397 10.83 1sg0A 230 11.10 c.23.5.3 118955 2p5bA 352 11.19 2bcjB 340 11.30 b.69.4.1 128289 2e9lA 469 13.26 2ghsA 326 13.32 b.68.6.1 135209 1jfmA 174 15.66 d.19.1.1 66640 1v93A 296 15.89 c.1.23.1 100532 2qcuA 501 15.89 2z43A 324 16.14 2qa1A 500 16.74 2j5vA 367 17.77 1zjkA 403 17.79 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1n9eA 787 17.90 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2fe7A 166 18.13 d.108.1.1 133325 2gdnA 267 18.83 1c0pA 363 20.70 c.4.1.2,d.16.1.3 30647,37934 1kcgC 178 20.71 d.19.1.1 68440 1l0qA 391 20.85 b.1.3.1,b.69.2.3 77644,77645 2dq6A 870 21.80 2ozhA 142 22.01 1a6zA 275 22.43 b.1.1.2,d.19.1.1 20781,38280 1vflA 356 22.58 c.1.9.1 120041 2vhfA 374 22.70 1r2jA 366 23.14 a.29.3.1,e.6.1.1 96869,96870 1rg9A 383 25.56 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1on0A 158 26.07 d.108.1.1 87095 2iutA 574 27.30 1cqmA 101 29.72 d.58.14.1 39321 2uytA 489 31.40 1zdrA 164 31.73 1thtA 305 33.20 c.69.1.13 34711 1zd3A 555 33.25 c.108.1.2,c.69.1.11 124930,124931 1pn0A 665 34.06 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2o5gA 148 37.85 2j5aA 110 38.11 2djkA 133 42.07 c.47.1.2 131548 3b79A 129 42.82 1ofcX 304 43.51 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 3tssA 194 44.34 b.40.2.2,d.15.6.1 25160,37749 1elvA 333 46.51 b.47.1.2,g.18.1.1 59454,59455 2h8lA 252 47.34 2fp8A 322 47.47 2ccmA 191 48.38 2obhA 143 48.80 2zfdA 226 49.74 1bifA 469 51.21 c.37.1.7,c.60.1.4 31961,34003 1senA 164 51.25 c.47.1.1 105465 1lbu 213 51.35 1r77A 103 52.65 2fikA 287 53.66 b.1.1.2,d.19.1.1 133524,133525 1xweA 151 54.94 b.40.3.3 116125 2dxnA 274 55.26 1i1qB 192 57.43 c.23.16.1 61544 1xuqA 212 57.59 2v84A 343 59.86 1c7gA 456 60.30 c.67.1.2 90415 1kb0A 677 60.95 a.3.1.6,b.70.1.1 68378,68379 2fsrA 195 60.99 d.108.1.1 134036 2ha8A 184 61.03 1g4wR 383 61.38 a.24.11.1,c.45.1.2 16644,32692 2p71A 132 61.96 a.39.2.1 139516 1pjxA 314 62.02 b.68.6.1 104167 2i6cA 160 62.56 d.108.1.1 137095 1xd3A 230 65.59 d.3.1.6 115145 1uhnA 189 66.09 a.39.1.5 99399 1ewkA 490 66.10 c.93.1.1 35712 1h30A 422 66.62 b.29.1.4,b.29.1.4 76604,76605 2d51A 406 66.76 1tkeA 224 67.95 d.15.10.1,d.67.1.1 112470,112471 1fadA 99 68.87 a.77.1.2 18428 1svjA 156 69.45 d.220.1.1 106049 1qwkA 317 69.66 c.1.7.1 96482 1xf1A 926 72.38 1vg0A 650 72.62 c.3.1.3,d.16.1.6 108596,108597 2hpkA 208 73.17 1x8qA 184 75.86 b.60.1.1 114966 1rkqA 282 76.06 c.108.1.10 97621 2bw4A 340 76.18 b.6.1.3,b.6.1.3 129320,129321 1uf5A 303 78.16 d.160.1.2 107808 1barA 140 78.31 b.42.1.1 25504 1xebA 150 79.59 d.108.1.1 115219 2gtqA 867 80.31 1yvkA 163 83.04 d.108.1.1 124101 1iv8A 720 83.57 b.71.1.1,c.1.8.1 76842,76843 2ov5A 261 84.05 2b5aA 77 85.10 a.35.1.3 127882 2pm7B 297 85.56 2feaA 236 85.58 c.108.1.20 133327 1ty0A 211 85.99 b.40.2.2,d.15.6.1 107440,107441 1crzA 403 86.12 b.68.4.1,c.51.2.1 27629,33211 1s4uX 407 86.31 b.69.4.1 112027 1utxA 66 86.48 a.35.1.3 108034 1woyA 500 86.68 a.27.1.1,c.26.1.1 121130,121131 2hhjA 267 86.83 c.60.1.1 136497 1ix9A 205 88.02 a.2.11.1,d.44.1.1 76899,76900 1g6aA 271 88.43 e.3.1.1 42704