# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	2.02e-18		
2icgA	160	1.51e-17		
2pagA	135	6.67e-16		
1ukfA	188	3.841	d.3.1.10	99488
3c26A	266	9.725		
1jfmA	174	9.789	d.19.1.1	66640
2r7hA	177	10.60		
2pbiB	354	11.55		
1n9eA	787	13.64	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
2fiaA	162	15.20	d.108.1.1	133514
1cqmA	101	15.25	d.58.14.1	39321
2qneA	495	16.50		
1gheA	177	17.27	d.108.1.1	76222
1rkqA	282	18.59	c.108.1.10	97621
1xl7A	612	24.94	c.43.1.3,c.43.1.3	115438,115439
2pulA	397	25.98		
1gotB	340	26.29	b.69.4.1	27648
1on0A	158	26.61	d.108.1.1	87095
2bvrH	252	26.80		
1y9qA	192	29.45	a.35.1.8,b.82.1.15	116592,116593
1vzqH	250	29.99		
2j5aA	110	30.59		
1zjkA	403	31.25	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1knwA	425	34.14	b.49.2.3,c.1.6.1	90969,90970
1ofcX	304	35.86	a.4.1.3,a.4.1.13,a.187.1.1	92826,92827,92828
2qa1A	500	36.46		
2qcuA	501	40.73		
2qxvA	361	40.89		
2olgA	278	42.94		
1kcgC	178	43.10	d.19.1.1	68440
2ozhA	142	43.21		
2b5aA	77	43.39	a.35.1.3	127882
2oqeA	660	45.17	b.30.2.1,d.17.2.1,d.17.2.1	139222,139223,139224
1yfqA	342	45.99	b.69.4.2	116680
1utxA	66	47.17	a.35.1.3	108034
1tkeA	224	47.47	d.15.10.1,d.67.1.1	112470,112471
1xweA	151	48.50	b.40.3.3	116125
2pgbB	259	51.58		
2cf8H	257	53.03		
2fe7A	166	53.46	d.108.1.1	133325
1y7yA	74	54.24	a.35.1.3	122729
2djkA	133	54.45	c.47.1.2	131548
2d51A	406	55.51		
1senA	164	57.16	c.47.1.1	105465
1elvA	333	57.68	b.47.1.2,g.18.1.1	59454,59455
2gnqA	336	58.94		
1r5mA	425	59.25		
1fadA	99	59.58	a.77.1.2	18428
1xuqA	212	60.73		
1jdc	429	60.82		
1go4A	205	62.70	d.135.1.1	70292
1kk8B	139	64.61	a.39.1.5	77430
1eejA	216	65.99	c.47.1.9,d.17.3.1	33057,38071
1b0nA	111	68.22	a.34.1.1,a.35.1.3	17001,17064
1h8dH	260	69.43		
1kb9A	431	72.92	d.185.1.1,d.185.1.1	77311,77312
1u7lA	392	74.54	e.57.1.1	113093
1c4kA	730	81.48	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
1adrA	76	81.87	a.35.1.2	17042
1g2rA	100	82.76	d.192.1.1	60231
2fsrA	195	83.50	d.108.1.1	134036
2p5bA	352	86.84		
2fikA	287	87.37	b.1.1.2,d.19.1.1	133524,133525
1z7lA	276	87.48		
2dtvA	397	88.44		
1xebA	150	88.90	d.108.1.1	115219