# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	6.37e-18		
2icgA	160	3.28e-17		
2pagA	135	2.50e-15		
1ukfA	188	3.458	d.3.1.10	99488
1jfmA	174	8.450	d.19.1.1	66640
2r7hA	177	8.686		
2qneA	495	9.98		
2fiaA	162	13.98	d.108.1.1	133514
3c26A	266	16.05		
1ix9A	205	21.70	a.2.11.1,d.44.1.1	76899,76900
1gheA	177	21.75	d.108.1.1	76222
1xuqA	212	22.13		
1xweA	151	22.44	b.40.3.3	116125
2pulA	397	29.08		
1zjkA	403	29.98	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2oqeA	660	30.42	b.30.2.1,d.17.2.1,d.17.2.1	139222,139223,139224
2ahqA	76	30.62		
1xl7A	612	33.60	c.43.1.3,c.43.1.3	115438,115439
1kcgC	178	34.86	d.19.1.1	68440
1bsmA	201	35.67	a.2.11.1,d.44.1.1	15780,38743
2pbiB	354	35.95		
1vzqH	250	36.46		
1cqmA	101	39.94	d.58.14.1	39321
2pgbB	259	43.52		
1kk8B	139	44.44	a.39.1.5	77430
2djkA	133	44.67	c.47.1.2	131548
1u7lA	392	45.61	e.57.1.1	113093
2qa1A	500	45.95		
2fe7A	166	48.30	d.108.1.1	133325
2i6cA	160	50.07	d.108.1.1	137095
1gotB	340	52.16	b.69.4.1	27648
1on0A	158	52.31	d.108.1.1	87095
1uqwA	509	52.63	c.94.1.1	99799
2cf8H	257	52.82		
2rcvA	202	53.00		
2bvrH	252	55.37		
1a6zA	275	58.69	b.1.1.2,d.19.1.1	20781,38280
2gnqA	336	58.98		
1sg0A	230	59.43	c.23.5.3	118955
1yreA	197	59.68	d.108.1.1	123919
1g2rA	100	62.18	d.192.1.1	60231
1eejA	216	62.57	c.47.1.9,d.17.3.1	33057,38071
2j5aA	110	63.37		
2o5cA	659	73.68		
1elvA	333	74.85	b.47.1.2,g.18.1.1	59454,59455
2qxvA	361	74.87		
2qcuA	501	75.44		
1c0pA	363	78.95	c.4.1.2,d.16.1.3	30647,37934
2olgA	278	80.30		
2ozhA	142	81.74		
1barA	140	82.32	b.42.1.1	25504
1fx7A	230	84.24	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1h2eA	207	84.92	c.60.1.1	70857
1qwoA	442	87.63	c.60.1.2	104620