# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	2.24e-16		
2icgA	160	2.26e-15		
2pagA	135	5.56e-14		
1ukfA	188	5.232	d.3.1.10	99488
1jfmA	174	5.856	d.19.1.1	66640
2qneA	495	6.991		
3c26A	266	8.725		
2r7hA	177	13.04		
2fiaA	162	14.93	d.108.1.1	133514
2fe7A	166	21.33	d.108.1.1	133325
1rkqA	282	21.36	c.108.1.10	97621
1a6zA	275	22.94	b.1.1.2,d.19.1.1	20781,38280
1kcgC	178	23.81	d.19.1.1	68440
1ix9A	205	25.21	a.2.11.1,d.44.1.1	76899,76900
1xuqA	212	26.40		
2ahqA	76	30.71		
2pbiB	354	34.67		
1zjkA	403	34.85	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1xweA	151	39.05	b.40.3.3	116125
1xl7A	612	39.25	c.43.1.3,c.43.1.3	115438,115439
2pulA	397	43.44		
1eejA	216	44.25	c.47.1.9,d.17.3.1	33057,38071
2qa1A	500	44.84		
2rcvA	202	45.04		
2pgbB	259	46.26		
2bvrH	252	47.44		
1gheA	177	47.73	d.108.1.1	76222
1cqmA	101	52.16	d.58.14.1	39321
1vzqH	250	54.14		
1y9qA	192	54.60	a.35.1.8,b.82.1.15	116592,116593
2cihA	183	54.78		
2yhxA	457	54.95	i.12.1.1	46024
2d5lA	706	55.55		
1on0A	158	55.65	d.108.1.1	87095
2i6cA	160	57.30	d.108.1.1	137095
1yreA	197	58.34	d.108.1.1	123919
1eumA	165	58.87	a.25.1.1	59507
2olgA	278	60.22		
2oqeA	660	61.63	b.30.2.1,d.17.2.1,d.17.2.1	139222,139223,139224
1r5mA	425	61.68		
2djkA	133	63.21	c.47.1.2	131548
1fx7A	230	64.70	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1kk8B	139	65.08	a.39.1.5	77430
1g2rA	100	65.60	d.192.1.1	60231
2ehsA	77	65.91		
2cf8H	257	66.51		
1c0pA	363	66.91	c.4.1.2,d.16.1.3	30647,37934
1utxA	66	67.42	a.35.1.3	108034
1lqvA	193	67.81	d.19.1.1	74206
2b5aA	77	70.28	a.35.1.3	127882
2dtvA	397	73.75		
1y7yA	74	76.97	a.35.1.3	122729
1s3qA	173	77.81	a.25.1.1	118848
1svjA	156	77.90	d.220.1.1	106049
1adrA	76	78.21	a.35.1.2	17042
1gotB	340	80.09	b.69.4.1	27648
1sg0A	230	83.02	c.23.5.3	118955
1txgA	335	83.50	a.100.1.6,c.2.1.6	112775,112776
1h99A	224	84.78	a.142.1.1,a.142.1.1	60814,60815
1t8kA	77	85.08	a.28.1.1	106666
2qnwA	82	85.30		
1barA	140	86.43	b.42.1.1	25504
2r1iA	172	87.19		
1yvkA	163	87.59	d.108.1.1	124101
2qxvA	361	87.78		
2j5aA	110	87.85		
2fikA	287	88.59	b.1.1.2,d.19.1.1	133524,133525
2o5cA	659	89.80