# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	4.93e-16		
2icgA	160	2.25e-15		
2pagA	135	7.55e-14		
1ukfA	188	4.033	d.3.1.10	99488
2qneA	495	6.045		
2fe7A	166	8.896	d.108.1.1	133325
3c26A	266	9.657		
2r7hA	177	10.25		
2fiaA	162	12.96	d.108.1.1	133514
1jfmA	174	14.15	d.19.1.1	66640
2qa1A	500	17.35		
1rkqA	282	17.95	c.108.1.10	97621
1gheA	177	23.92	d.108.1.1	76222
2pulA	397	24.41		
1cqmA	101	25.92	d.58.14.1	39321
1xweA	151	27.77	b.40.3.3	116125
1zjkA	403	32.75	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1z5hA	780	34.76		
1eejA	216	35.80	c.47.1.9,d.17.3.1	33057,38071
1y9qA	192	36.09	a.35.1.8,b.82.1.15	116592,116593
1kcgC	178	37.06	d.19.1.1	68440
2pgbB	259	37.18		
1vzqH	250	38.15		
2bvrH	252	38.35		
2pbiB	354	38.48		
1xl7A	612	38.76	c.43.1.3,c.43.1.3	115438,115439
1ix9A	205	39.81	a.2.11.1,d.44.1.1	76899,76900
2qcuA	501	41.17		
1xuqA	212	41.27		
2j5aA	110	42.97		
2cf8H	257	45.36		
1on0A	158	45.41	d.108.1.1	87095
1a6zA	275	48.25	b.1.1.2,d.19.1.1	20781,38280
2djkA	133	50.06	c.47.1.2	131548
2oqeA	660	55.94	b.30.2.1,d.17.2.1,d.17.2.1	139222,139223,139224
2olgA	278	57.04		
2i6cA	160	60.13	d.108.1.1	137095
2b5aA	77	61.61	a.35.1.3	127882
1gotB	340	62.79	b.69.4.1	27648
2cihA	183	64.18		
1adrA	76	66.14	a.35.1.2	17042
1u7lA	392	66.92	e.57.1.1	113093
2qxvA	361	68.33		
1n9eA	787	68.37	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
1svjA	156	68.85	d.220.1.1	106049
2rcvA	202	70.20		
1y7yA	74	70.72	a.35.1.3	122729
1uqwA	509	72.76	c.94.1.1	99799
1lqvA	193	73.48	d.19.1.1	74206
2ahqA	76	75.14		
1g2rA	100	75.21	d.192.1.1	60231
2yhxA	457	76.06	i.12.1.1	46024
1h8dH	260	77.63		
1kk8B	139	78.47	a.39.1.5	77430
2fsrA	195	79.54	d.108.1.1	134036
1utxA	66	79.71	a.35.1.3	108034
1h2iA	209	79.95	d.50.1.3	76550
1txgA	335	81.30	a.100.1.6,c.2.1.6	112775,112776
2ehsA	77	84.29		
2dtvA	397	85.70		
2d5lA	706	87.32		
2gnqA	336	88.06		
1yreA	197	89.72	d.108.1.1	123919