# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	1.18e-14		
2icgA	160	6.19e-13		
2pagA	135	5.60e-12		
2gnqA	336	5.278		
1thtA	305	6.077	c.69.1.13	34711
2p5bA	352	14.39		
2pulA	397	23.11		
1a0rB	340	23.54	b.69.4.1	27658
1crzA	403	30.59	b.68.4.1,c.51.2.1	27629,33211
1tqhA	247	31.12	c.69.1.29	107225
2phcB	225	33.75		
2ahqA	76	35.16		
2ebsA	789	37.72		
1utxA	66	37.90	a.35.1.3	108034
2h14A	317	39.31		
1efyA	350	42.69	a.41.1.1,d.166.1.2	17413,42275
2aq5A	402	45.13		
2r7hA	177	47.52		
1s4uX	407	48.35	b.69.4.1	112027
1ix9A	205	51.64	a.2.11.1,d.44.1.1	76899,76900
3cgvA	397	51.80		
1gxrA	337	53.53	b.69.4.1	70722
1zjkA	403	54.14	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2oitA	434	54.82		
1adrA	76	55.28	a.35.1.2	17042
2c4nA	250	58.36	c.108.1.14	129837
1r1dA	247	61.97	c.69.1.29	96813
2oqyA	391	64.11		
1th0A	226	64.14	d.3.1.7	106903
2aq2B	237	64.32	b.40.2.2,d.15.6.1	127146,127147
1yvkA	163	65.44	d.108.1.1	124101
2qjwA	176	66.65		
2ojhA	297	66.91		
2qcuA	501	68.59		
1b0nA	111	73.11	a.34.1.1,a.35.1.3	17001,17064
1azo	232	75.78		
1c0pA	363	77.02	c.4.1.2,d.16.1.3	30647,37934
1fadA	99	81.65	a.77.1.2	18428
2oixA	186	82.01		
1gotB	340	83.29	b.69.4.1	27648
2b5aA	77	84.39	a.35.1.3	127882
2qneA	495	85.10		
1dykA	394	85.50	b.29.1.4,b.29.1.4	24223,24224
2ehsA	77	85.52		
1ys1X	320	85.62		
1y7yA	74	86.64	a.35.1.3	122729