# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	1.73e-15		
2icgA	160	4.06e-14		
2pagA	135	7.84e-13		
1zjkA	403	12.14	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1xuqA	212	15.44		
1ix9A	205	17.57	a.2.11.1,d.44.1.1	76899,76900
1jfmA	174	17.59	d.19.1.1	66640
1ukfA	188	24.95	d.3.1.10	99488
2gnqA	336	29.89		
1s4uX	407	32.29	b.69.4.1	112027
2rcvA	202	35.53		
2r7hA	177	40.45		
2pbiB	354	42.85		
3cgvA	397	43.37		
1elvA	333	46.99	b.47.1.2,g.18.1.1	59454,59455
1lqvA	193	47.14	d.19.1.1	74206
1utxA	66	47.94	a.35.1.3	108034
1lbkA	208	53.58	a.45.1.1,c.47.1.5	73809,73810
1vg0A	650	57.86	c.3.1.3,d.16.1.6	108596,108597
1gotB	340	60.46	b.69.4.1	27648
2phcB	225	63.50		
1uwcA	261	64.23	c.69.1.17	100101
2asuB	234	66.59		
2h14A	317	69.26		
1x99A	145	71.04	b.97.1.2	114978
1bsmA	201	74.51	a.2.11.1,d.44.1.1	15780,38743
3ce7A	107	75.10		
2pulA	397	75.62		
2oizA	361	76.26		
1yvkA	163	78.76	d.108.1.1	124101
2ahqA	76	79.48		
2hx1A	284	79.82		
1kcgC	178	85.36	d.19.1.1	68440
1w9zA	283	89.89