# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pagA	135	4.03e-09		
2prvA	153	8.81e-09		
2icgA	160	1.23e-08		
2qneA	495	0.3550		
1kk8B	139	5.930	a.39.1.5	77430
2dt5A	211	6.584	a.4.5.38,c.2.1.12	131708,131709
1aj8A	371	8.267	a.103.1.1	18900
2b8nA	429	9.856	c.118.1.1	128093
1a0pA	290	10.72	a.60.9.1,d.163.1.1	18105,42165
1a0p	290	11.67		
2vebA	195	12.25		
3buxB	329	20.02		
1yvhA	329	20.07	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098
1zelA	298	20.95		
1wdcC	156	23.07	a.39.1.5	17317
1wdcB	156	25.95	a.39.1.5	17302
1dl5A	317	26.27	c.66.1.7,d.197.1.1	64720,64721
1zt2B	212	28.05	a.262.1.1	125625
2agaA	190	28.40		
1nrzA	164	28.42	c.38.1.1	86131
1tr8A	102	28.85		
1i1qB	192	29.90	c.23.16.1	61544
1xp2A	179	30.44		
1xdzA	240	30.77	c.66.1.20	115196
1jx4A	352	31.79	d.240.1.1,e.8.1.7	90378,90379
1zjkA	403	34.36	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2z15A	130	35.54		
1gk8I	140	36.06	d.73.1.1	65242
2d74B	148	36.95		
2bz6H	254	39.27	b.47.1.2	129552
2qvjA	421	39.74		
2c8eE	211	42.41		
1bia	321	43.12		
2q22A	139	43.93		
1s3cA	141	43.95		
1ro2A	216	45.87	d.264.1.2	97665
1eaxA	241	46.72	b.47.1.2	64889
2gfhA	260	47.00	c.108.1.6	135096
2hszA	243	47.91	c.108.1.6	136726
2r18A	139	48.22		
1ir21	140	48.98		
1tkeA	224	49.02	d.15.10.1,d.67.1.1	112470,112471
1biaA	321	49.09	a.4.5.1,b.34.1.1,d.104.1.2	16083,24447,40787
2pibA	216	49.10		
1m45A	148	49.97	a.39.1.5	78598
1li4A	432	52.07	c.2.1.4,c.23.12.3	84616,84617
1rscI	111	52.57	d.73.1.1	118620
1zoqC	47	55.43	a.153.1.1	125453
1e0cA	271	56.77	c.46.1.2,c.46.1.2	32717,32718
8rucI	123	57.33	d.73.1.1	39629
1cv8	174	57.39		
1cv8A	174	57.44	d.3.1.1	37089
2bl0B	145	57.70		
2qhoB	53	58.67		
1oaiA	59	60.92	a.5.2.3	81255
1rblI	109	61.12	d.73.1.1	118599
2hoqA	241	61.41		
2dx0A	138	61.46		
2b0cA	206	62.57	c.108.1.2	127633
2da7A	71	63.68		
2d5rB	116	65.00		
2ifcA	385	65.16		
1ggzA	148	65.33	a.39.1.5	70176
1i7qB	193	65.94	c.23.16.1	61902
2om6A	235	66.62		
2zc2A	78	67.52		
2bl0C	142	69.14		
1yqgA	263	70.53		
2q4kA	251	70.56	d.86.1.2	139864
1vgmA	378	70.56		
1xizA	159	72.48	d.112.1.1	115375
2gicA	422	73.15	a.260.1.1	135227
1i2sA	282	74.94	e.3.1.1	71104
1uujA	88	75.16	a.221.1.1	108046
2pgnA	589	75.82		
1l8rA	101	76.30	a.6.1.4	73700
2qsrA	173	77.18		
1xcbA	211	77.45	a.4.5.38,c.2.1.12	109552,109553
1u7kA	131	78.16	a.73.1.1	113087
1x9mA	698	79.17	c.55.3.5,e.8.1.1	114999,115000
3cnhA	200	81.01		
1wddS	128	81.94	d.73.1.1	114532
1r45A	204	83.15	d.166.1.1	111683
2p2wA	367	84.61		
1sgvA	316	85.39	b.122.1.1,d.265.1.2	98858,98859
1svdM	110	86.22	d.73.1.1	119059
1gnwA	211	87.85	a.45.1.1,c.47.1.5	17727,33021
2ibpA	409	89.56