Best Alignments for T0401

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2prvA	1.0360e-19	2prvA/T0401-2prvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2icgA	1.1848e-16	2icgA/T0401-2icgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pagA	2.6570e-16	2pagA/T0401-2pagA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j5aA	1.1572e+01	2j5aA/T0401-2j5aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jyoA	1.1774e+01	1jyoA/T0401-1jyoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.198.1.1
2djkA	1.2794e+01	2djkA/T0401-2djkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.47.1.2
1xl7A	3.0505e+01	1xl7A/T0401-1xl7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.43.1.3 c.43.1.3
1zrnA	3.2072e+01	1zrnA/T0401-1zrnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.108.1.1
1louA	3.2515e+01	1louA/T0401-1louA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.14.1
2nruA	3.2727e+01	2nruA/T0401-2nruA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1cqmA	3.2786e+01	1cqmA/T0401-1cqmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.14.1
1t7vA	3.9140e+01	1t7vA/T0401-1t7vA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.1.2 d.19.1.1
1ro2A	3.9667e+01	1ro2A/T0401-1ro2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.264.1.2
2coaA	4.2309e+01	2coaA/T0401-2coaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cx5A	4.2562e+01	2cx5A/T0401-2cx5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zjkA	4.5323e+01	1zjkA/T0401-1zjkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.47.1.2 g.18.1.1 g.18.1.1
1v61A	4.5925e+01	1v61A/T0401-1v61A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ryiA	4.6133e+01	1ryiA/T0401-1ryiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.3.1.2 d.16.1.3
1vkiA	4.6538e+01	1vkiA/T0401-1vkiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1h8dH	4.8801e+01	1h8dH/T0401-1h8dH-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001