# List of top-scoring protein chains for T0401.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	5.00e-09		
2icgA	160	0.000131		
2pagA	135	0.000439		
1tk1A	260	11.44	d.248.1.1	107066
1tklA	326	13.21	d.248.1.1	107105
1txnA	328	13.25	d.248.1.1	112779
1nsaA	395	16.29	c.56.5.1,d.58.3.1	33825,39066
2h9bA	312	22.10		
1j3bA	529	33.96	c.91.1.1,c.109.1.1	77071,77072
1i1dA	161	34.03	d.108.1.1	61526
1i12A	160	34.12	d.108.1.1	61515
1i21A	159	34.21	d.108.1.1	61549
1ozyA	121	42.85	a.133.1.2	104047
2ig7A	401	42.91		
2eoaA	177	43.48		
2d5cA	263	45.03		
1d2sA	170	47.63	b.29.1.4	24221
1kdkA	177	59.41	b.29.1.4	72351
1lhwA	189	60.01	b.29.1.4	77966
1f5fA	205	61.16	b.29.1.4	24222
2i7qA	402	67.87		
1fkwA	349	68.18	c.1.9.1	29019
1fkxA	349	68.19	c.1.9.1	29018
1uipA	349	68.41	c.1.9.1	29022
1a4mA	349	68.90	c.1.9.1	29014
1uioA	349	69.53	c.1.9.1	29021
2adaA	352	69.99	c.1.9.1	29027
1sq4A	278	71.68	b.82.1.11	98962
2je3A	186	76.67		
2axqA	467	79.55