# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	8.94e-20		
2icgA	160	2.16e-17		
2pagA	135	1.78e-16		
2j5aA	110	2.852		
1xl7A	612	5.770	c.43.1.3,c.43.1.3	115438,115439
2nruA	307	6.369		
1zrnA	232	11.11	c.108.1.1	43323
2obiA	183	11.64		
1louA	101	12.52	d.58.14.1	39323
1cqmA	101	13.01	d.58.14.1	39321
1zjkA	403	16.75	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1svjA	156	17.58	d.220.1.1	106049
1h8dH	260	18.07		
1eaxA	241	21.63	b.47.1.2	64889
1ro2A	216	22.18	d.264.1.2	97665
1h2iA	209	23.12	d.50.1.3	76550
1ro0A	216	25.05	d.264.1.2	97664
3besR	250	26.12		
2p5qA	170	26.79		
1h99A	224	29.21	a.142.1.1,a.142.1.1	60814,60815
2djkA	133	29.65	c.47.1.2	131548
1k94A	165	31.63	a.39.1.8	68333
1st9A	143	33.68	c.47.1.10	98987
1p3jA	217	33.77	c.37.1.1,g.41.2.1	94022,94023
1ryiA	382	39.53	c.3.1.2,d.16.1.3	118813,118814
1nexB	464	40.54	a.158.1.1,b.69.4.1	80443,80444
1os8A	223	42.22	b.47.1.1	93481
1xfxA	777	43.93		
1pvdA	537	44.57	c.31.1.3,c.36.1.5,c.36.1.9	31737,31777,31778
1xreA	217	46.80		
1lbu	213	47.35		
1z45A	699	49.69	b.30.5.4,c.2.1.2	124427,124428
1barA	140	50.72	b.42.1.1	25504
1j7nA	776	50.84	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1y7yA	74	56.05	a.35.1.3	122729
1vhsA	175	57.91	d.108.1.1	100698
2abbA	364	58.47	c.1.4.1	126517
1xfuA	747	59.30		
1t8kA	77	59.55	a.28.1.1	106666
1jofA	365	60.46	b.69.10.1	71775
2dy1A	665	62.23		
1t7vA	278	64.21	b.1.1.2,d.19.1.1	112302,112303
1f80D	81	68.54	a.28.1.1	59686
1v93A	296	70.90	c.1.23.1	100532
2ahqA	76	76.15		
2ehsA	77	76.25		
1ukfA	188	78.62	d.3.1.10	99488
1l0iA	78	79.10	a.28.1.1	77643
1jssA	224	81.69	d.129.3.2	71844
1h4vB	421	85.75	c.51.1.1,d.104.1.1	60624,60625
1sq9A	397	86.28	b.69.4.1	105889
1extA	162	86.52	g.24.1.1,g.24.1.1,g.24.1.1	44900,44901,44902
1q1hA	110	86.67	a.4.5.41	95580
1rw1A	114	88.93	c.47.1.12	111945
1b0nA	111	89.05	a.34.1.1,a.35.1.3	17001,17064