# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	6.87e-17		
2icgA	160	1.04e-14		
2pagA	135	7.50e-14		
2j5aA	110	4.828		
2nruA	307	5.610		
1h8dH	260	9.165		
1cqmA	101	16.77	d.58.14.1	39321
1eaxA	241	17.57	b.47.1.2	64889
1louA	101	17.72	d.58.14.1	39323
1zjkA	403	20.57	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1ro2A	216	23.07	d.264.1.2	97665
1xl7A	612	23.71	c.43.1.3,c.43.1.3	115438,115439
2djkA	133	30.64	c.47.1.2	131548
2abbA	364	35.80	c.1.4.1	126517
1z45A	699	38.16	b.30.5.4,c.2.1.2	124427,124428
1ryiA	382	39.27	c.3.1.2,d.16.1.3	118813,118814
2vafA	378	41.04		
3bn8A	128	41.79		
1p3jA	217	42.21	c.37.1.1,g.41.2.1	94022,94023
1h2iA	209	43.76	d.50.1.3	76550
1zrnA	232	44.73	c.108.1.1	43323
1ro0A	216	44.85	d.264.1.2	97664
1vhsA	175	47.76	d.108.1.1	100698
2obiA	183	50.84		
1svjA	156	54.33	d.220.1.1	106049
1j7nA	776	55.47	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1lbu	213	55.85		
1h99A	224	56.57	a.142.1.1,a.142.1.1	60814,60815
2ahqA	76	57.00		
1k94A	165	58.99	a.39.1.8	68333
2p5qA	170	59.51		
1st9A	143	63.38	c.47.1.10	98987
3besR	250	63.82		
1os8A	223	65.01	b.47.1.1	93481
1t7vA	278	67.19	b.1.1.2,d.19.1.1	112302,112303
1gqpA	221	68.89	b.18.1.9	70372
1xipA	388	73.48	b.69.14.1	115360
1nexB	464	74.08	a.158.1.1,b.69.4.1	80443,80444
1jofA	365	78.20	b.69.10.1	71775
1xfxA	777	79.57		
2a6pA	208	80.47		
1xweA	151	80.75	b.40.3.3	116125
2pkpA	170	82.06		
2bvrH	252	83.12		
1xreA	217	85.60		
2g2kA	170	85.70