# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	3.59e-18		
2icgA	160	8.37e-16		
2pagA	135	1.10e-14		
2j5aA	110	3.943		
1ro2A	216	4.534	d.264.1.2	97665
1svjA	156	6.093	d.220.1.1	106049
1st9A	143	7.171	c.47.1.10	98987
1jyoA	130	8.423	d.198.1.1	67483
2obiA	183	9.275		
2v3gA	283	10.35		
2abbA	364	10.61	c.1.4.1	126517
1k94A	165	12.15	a.39.1.8	68333
1ro0A	216	12.18	d.264.1.2	97664
1louA	101	13.14	d.58.14.1	39323
1zrnA	232	13.55	c.108.1.1	43323
1cqmA	101	13.58	d.58.14.1	39321
1zjkA	403	15.05	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1zjjA	263	15.81		
4pah	308	17.43		
1xl7A	612	17.57	c.43.1.3,c.43.1.3	115438,115439
1xipA	388	18.66	b.69.14.1	115360
1z45A	699	19.06	b.30.5.4,c.2.1.2	124427,124428
2dy1A	665	20.26		
2gtqA	867	25.12		
2nruA	307	25.54		
1zzgA	415	26.82		
1h2iA	209	29.06	d.50.1.3	76550
2gouA	365	29.53		
1kfuL	699	30.45	a.39.1.8,b.14.1.1,d.3.1.3	68571,68572,68573
2fm8A	135	33.16	d.198.1.1	133767
1rw1A	114	34.28	c.47.1.12	111945
1ryiA	382	36.11	c.3.1.2,d.16.1.3	118813,118814
2p5qA	170	37.81		
1eaxA	241	39.52	b.47.1.2	64889
2qneA	495	42.55		
1icpA	376	42.76	c.1.4.1	62270
1v93A	296	44.56	c.1.23.1	100532
1p3jA	217	45.55	c.37.1.1,g.41.2.1	94022,94023
1vyrA	364	47.49	c.1.4.1	108906
1vhsA	175	47.64	d.108.1.1	100698
1h99A	224	49.37	a.142.1.1,a.142.1.1	60814,60815
2djkA	133	49.90	c.47.1.2	131548
1nhpA	447	52.04	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
1j8uA	325	52.26	d.178.1.1	71611
1yiqA	689	54.12		
2ivwA	113	54.55		
2hoqA	241	54.57		
2qa1A	500	55.35		
2cxnA	557	56.11		
2gmwA	211	56.98		
1t8kA	77	57.97	a.28.1.1	106666
2ofcA	142	58.00		
3bjuA	521	59.12		
1yvkA	163	59.17	d.108.1.1	124101
1f4qA	165	59.25	a.39.1.8	17360
1h8dH	260	59.74		
1u0fA	564	63.01	c.80.1.2	112912
1l0iA	78	64.10	a.28.1.1	77643
2ehsA	77	67.11		
1fx7A	230	67.91	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1rovA	857	71.43	a.119.1.1,b.12.1.1	97674,97675
1barA	140	72.11	b.42.1.1	25504
1q7hA	153	76.39	b.122.1.1,d.17.6.2	96042,96043
2hi0A	240	76.40		
1xreA	217	77.04		
2hsiA	282	80.02		
2p3hA	101	80.34		
1m12A	84	81.16	a.64.1.1	84745
2hbpA	68	81.77		
3bn8A	128	82.89		
1w1kA	560	82.93	d.58.32.1,d.145.1.1	109059,109060
2cw8A	537	83.32		
1kv9A	668	84.69	a.3.1.6,b.70.1.1	73056,73057
2ahqA	76	84.92		
2oq1A	254	86.50	d.93.1.1,d.93.1.1	139220,139221
1yrtA	364	86.75		
2g2kA	170	86.95		
1a8y	367	87.13		
1z70X	311	88.66	d.169.1.7	124581
1y8cA	246	88.93	c.66.1.43	116563