# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	7.16e-18		
2icgA	160	8.92e-15		
2pagA	135	6.86e-14		
2j5aA	110	6.301		
1ryiA	382	6.832	c.3.1.2,d.16.1.3	118813,118814
1xl7A	612	7.123	c.43.1.3,c.43.1.3	115438,115439
2nruA	307	10.65		
1nexB	464	14.68	a.158.1.1,b.69.4.1	80443,80444
1zjkA	403	16.65	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1zrnA	232	17.11	c.108.1.1	43323
1vhsA	175	21.02	d.108.1.1	100698
2obiA	183	22.19		
1jyoA	130	24.40	d.198.1.1	67483
1jofA	365	25.88	b.69.10.1	71775
2djkA	133	25.88	c.47.1.2	131548
1eaxA	241	25.88	b.47.1.2	64889
1h2iA	209	26.98	d.50.1.3	76550
1h8dH	260	29.08		
1barA	140	29.55	b.42.1.1	25504
1xreA	217	30.14		
1louA	101	32.88	d.58.14.1	39323
1k94A	165	34.16	a.39.1.8	68333
1cqmA	101	34.25	d.58.14.1	39321
2cztA	167	38.69		
2bibA	547	39.58	b.109.1.1,d.157.1.8	128581,128582
3bjuA	521	41.11		
1sq9A	397	43.49	b.69.4.1	105889
1svjA	156	44.51	d.220.1.1	106049
1st9A	143	45.41	c.47.1.10	98987
1j7nA	776	47.66	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1ro0A	216	48.86	d.264.1.2	97664
3besR	250	49.79		
1h99A	224	50.58	a.142.1.1,a.142.1.1	60814,60815
1tiqA	180	53.02	d.108.1.1	107010
1crzA	403	53.06	b.68.4.1,c.51.2.1	27629,33211
1ro2A	216	53.11	d.264.1.2	97665
2z3zA	706	54.47		
2h8lA	252	55.78		
1eejA	216	57.54	c.47.1.9,d.17.3.1	33057,38071
1yvkA	163	57.89	d.108.1.1	124101
1t7vA	278	58.95	b.1.1.2,d.19.1.1	112302,112303
3bn8A	128	60.68		
2dq6A	870	60.72		
1q2yA	140	61.47	d.108.1.1	95655
2ofcA	142	73.13		
2fm8A	135	73.90	d.198.1.1	133767
1z45A	699	74.43	b.30.5.4,c.2.1.2	124427,124428
1afcA	140	75.98	b.42.1.1	25506
2qflA	267	76.80		
2hsiA	282	78.52		
1u4cA	349	79.14	b.69.4.2	107666
1os8A	223	81.14	b.47.1.1	93481
1ozhA	566	81.94	c.31.1.3,c.36.1.5,c.36.1.9	93833,93834,93835
2a50B	168	82.60		
1on0A	158	82.77	d.108.1.1	87095
2b5aA	77	84.18	a.35.1.3	127882
1q7hA	153	86.00	b.122.1.1,d.17.6.2	96042,96043
2afgA	140	87.04	b.42.1.1	25514
1p3jA	217	87.65	c.37.1.1,g.41.2.1	94022,94023
4pah	308	87.65		
1ng4A	390	87.94	c.3.1.2,d.16.1.3	85666,85667