# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	1.17e-18		
2icgA	160	1.53e-15		
2pagA	135	1.31e-14		
1xl7A	612	4.760	c.43.1.3,c.43.1.3	115438,115439
1ryiA	382	4.777	c.3.1.2,d.16.1.3	118813,118814
2j5aA	110	7.413		
1zrnA	232	15.44	c.108.1.1	43323
1zjkA	403	20.36	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2djkA	133	22.02	c.47.1.2	131548
1eaxA	241	23.05	b.47.1.2	64889
1h2iA	209	23.66	d.50.1.3	76550
1h8dH	260	23.76		
2nruA	307	24.96		
1jofA	365	26.45	b.69.10.1	71775
2obiA	183	26.46		
1louA	101	30.24	d.58.14.1	39323
1vhsA	175	30.73	d.108.1.1	100698
1cqmA	101	32.08	d.58.14.1	39321
1ro2A	216	36.67	d.264.1.2	97665
1h99A	224	36.88	a.142.1.1,a.142.1.1	60814,60815
1z45A	699	40.88	b.30.5.4,c.2.1.2	124427,124428
1st9A	143	41.61	c.47.1.10	98987
3besR	250	43.09		
1svjA	156	44.47	d.220.1.1	106049
1j7nA	776	44.62	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
2cztA	167	48.83		
1nexB	464	48.85	a.158.1.1,b.69.4.1	80443,80444
1k94A	165	49.72	a.39.1.8	68333
1xreA	217	50.49		
3bn8A	128	50.69		
1p3jA	217	50.85	c.37.1.1,g.41.2.1	94022,94023
1barA	140	50.88	b.42.1.1	25504
2h8lA	252	56.74		
1ro0A	216	57.65	d.264.1.2	97664
1t7vA	278	60.81	b.1.1.2,d.19.1.1	112302,112303
2a50B	168	60.98		
3cgvA	397	61.27		
1ng4A	390	63.02	c.3.1.2,d.16.1.3	85666,85667
1ukfA	188	72.20	d.3.1.10	99488
1pvdA	537	75.20	c.31.1.3,c.36.1.5,c.36.1.9	31737,31777,31778
2uz0A	263	81.42		
1os8A	223	82.65	b.47.1.1	93481
1ozhA	566	83.59	c.31.1.3,c.36.1.5,c.36.1.9	93833,93834,93835
2p5qA	170	84.86		
1ggxA	223	86.12	d.22.1.1	38367
1q35A	320	86.68	c.94.1.1	95661
2dq6A	870	86.95		
4pah	308	87.86