# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	6.05e-19		
2icgA	160	8.28e-16		
2pagA	135	1.05e-14		
1xl7A	612	3.257	c.43.1.3,c.43.1.3	115438,115439
1ryiA	382	4.923	c.3.1.2,d.16.1.3	118813,118814
2j5aA	110	5.038		
2nruA	307	13.35		
1zrnA	232	15.00	c.108.1.1	43323
2djkA	133	16.89	c.47.1.2	131548
1zjkA	403	17.82	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2obiA	183	21.43		
1eaxA	241	21.45	b.47.1.2	64889
1h8dH	260	22.11		
1louA	101	22.62	d.58.14.1	39323
1jofA	365	23.84	b.69.10.1	71775
1cqmA	101	25.39	d.58.14.1	39321
1vhsA	175	25.47	d.108.1.1	100698
3cgvA	397	25.67		
1h2iA	209	27.21	d.50.1.3	76550
1svjA	156	30.78	d.220.1.1	106049
1p3jA	217	37.75	c.37.1.1,g.41.2.1	94022,94023
1h99A	224	38.70	a.142.1.1,a.142.1.1	60814,60815
1j7nA	776	38.88	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
2h8lA	252	38.95		
1st9A	143	39.56	c.47.1.10	98987
1ng4A	390	40.55	c.3.1.2,d.16.1.3	85666,85667
1z45A	699	40.95	b.30.5.4,c.2.1.2	124427,124428
3besR	250	41.15		
1ro2A	216	42.99	d.264.1.2	97665
1pvdA	537	45.33	c.31.1.3,c.36.1.5,c.36.1.9	31737,31777,31778
1barA	140	48.95	b.42.1.1	25504
1vmbA	140	49.08	d.58.14.1	113672
1nexB	464	53.23	a.158.1.1,b.69.4.1	80443,80444
2a50B	168	54.61		
3bn8A	128	56.60		
1ukfA	188	59.22	d.3.1.10	99488
1ro0A	216	59.31	d.264.1.2	97664
1k94A	165	59.65	a.39.1.8	68333
2p5qA	170	64.69		
2cztA	167	65.15		
1t7vA	278	65.99	b.1.1.2,d.19.1.1	112302,112303
1c0pA	363	69.25	c.4.1.2,d.16.1.3	30647,37934
2b5aA	77	71.61	a.35.1.3	127882
2bibA	547	75.88	b.109.1.1,d.157.1.8	128581,128582
1yvkA	163	76.42	d.108.1.1	124101
2dy1A	665	77.02		
2dq6A	870	80.74		
1ozhA	566	82.14	c.31.1.3,c.36.1.5,c.36.1.9	93833,93834,93835
1afcA	140	82.74	b.42.1.1	25506
2bvrH	252	83.48		
1bfd	528	83.68		
2vafA	378	85.69		
1y7yA	74	86.71	a.35.1.3	122729
1q6zA	528	87.20	c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657
1ggxA	223	88.24	d.22.1.1	38367