# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2prvA 153 2.28e-19 2icgA 160 7.02e-16 2pagA 135 3.12e-15 2j5aA 110 1.846 1ro2A 216 1.937 d.264.1.2 97665 1ro0A 216 2.584 d.264.1.2 97664 1zrnA 232 2.951 c.108.1.1 43323 1louA 101 5.110 d.58.14.1 39323 1cqmA 101 8.297 d.58.14.1 39321 1xreA 217 10.62 2djkA 133 12.29 c.47.1.2 131548 1vmbA 140 14.40 d.58.14.1 113672 2qkiC 343 16.14 1vgmA 378 19.73 1rw1A 114 21.52 c.47.1.12 111945 1on0A 158 28.38 d.108.1.1 87095 1aj8A 371 29.72 a.103.1.1 18900 2ahqA 76 31.21 2da7A 71 34.38 1z3eA 132 35.53 c.47.1.12 124400 1y7yA 74 38.87 a.35.1.3 122729 2b5aA 77 40.60 a.35.1.3 127882 1jyoA 130 41.24 d.198.1.1 67483 2ahrA 259 41.71 a.100.1.10,c.2.1.6 126775,126776 1utxA 66 44.22 a.35.1.3 108034 3bqpA 80 45.01 1ggxA 223 46.59 d.22.1.1 38367 1svjA 156 47.83 d.220.1.1 106049 2h8lA 252 48.06 1b0nA 111 48.86 a.34.1.1,a.35.1.3 17001,17064 1x42A 232 50.21 c.108.1.1 121677 1mmlA 265 51.10 e.8.1.2 43015 1adrA 76 52.63 a.35.1.2 17042 1eejA 216 53.04 c.47.1.9,d.17.3.1 33057,38071 1iseA 185 53.34 d.67.3.1 90691 1q7hA 153 53.56 b.122.1.1,d.17.6.2 96042,96043 1nhpA 447 55.42 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2pl5A 366 57.67 2gicA 422 57.85 a.260.1.1 135227 1sq9A 397 58.32 b.69.4.1 105889 1tkeA 224 58.65 d.15.10.1,d.67.1.1 112470,112471 1nexB 464 61.93 a.158.1.1,b.69.4.1 80443,80444 1o3uA 135 63.07 a.24.16.3 86615 2qneA 495 63.61 2dy1A 665 64.80 2rcvA 202 65.08 2c31A 568 65.74 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1m12A 84 66.22 a.64.1.1 84745 1v93A 296 67.57 c.1.23.1 100532 1x0tA 120 69.59 2q3pA 112 69.94 d.58.4.4 139798 1uisA 231 71.60 d.22.1.1 99431 1s1eA 224 72.44 a.39.1.5 112007 1omiA 248 73.71 b.82.3.3,a.4.5.4 87079,87080 1t8kA 77 75.11 a.28.1.1 106666 1st9A 143 75.75 c.47.1.10 98987 2ehsA 77 76.84 1ppjA 446 80.34 d.185.1.1,d.185.1.1 104252,104253 2hoqA 241 80.77 1s4uX 407 81.80 b.69.4.1 112027 2dt5A 211 82.12 a.4.5.38,c.2.1.12 131708,131709 2p4mA 219 82.21 1u4cA 349 84.82 b.69.4.2 107666 1q87A 221 86.43 e.47.1.1 96192 1lk2A 274 86.63 b.1.1.2,d.19.1.1 91056,91057 1yvkA 163 86.92 d.108.1.1 124101 1crzA 403 86.98 b.68.4.1,c.51.2.1 27629,33211 3cgvA 397 87.63 1qu0A 191 87.98 b.29.1.4 24225 1v7oA 165 88.36 d.67.1.2 100480 1vkuA 100 88.74 a.28.1.1 108690 1xweA 151 88.80 b.40.3.3 116125 1vrmA 325 89.29 d.96.2.1 120472 2gx5A 170 89.68