# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2prvA 153 1.36e-18 2icgA 160 2.58e-16 2pagA 135 1.51e-15 2j5aA 110 2.179 1xl7A 612 4.154 c.43.1.3,c.43.1.3 115438,115439 2nruA 307 5.610 1cqmA 101 7.667 d.58.14.1 39321 1louA 101 10.33 d.58.14.1 39323 1ryiA 382 13.10 c.3.1.2,d.16.1.3 118813,118814 1jyoA 130 14.65 d.198.1.1 67483 1svjA 156 15.10 d.220.1.1 106049 2djkA 133 18.74 c.47.1.2 131548 1ro2A 216 18.88 d.264.1.2 97665 1h2iA 209 21.87 d.50.1.3 76550 2gtqA 867 22.15 1j7nA 776 23.86 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 2abbA 364 24.53 c.1.4.1 126517 2dy1A 665 25.22 1ro0A 216 26.80 d.264.1.2 97664 1nexB 464 27.52 a.158.1.1,b.69.4.1 80443,80444 1t7vA 278 28.65 b.1.1.2,d.19.1.1 112302,112303 1h8dH 260 29.54 1jofA 365 31.65 b.69.10.1 71775 1vhsA 175 33.19 d.108.1.1 100698 2cztA 167 36.77 1yvkA 163 37.67 d.108.1.1 124101 1k9vF 201 39.80 c.23.16.1 68365 1zrnA 232 41.19 c.108.1.1 43323 1q2yA 140 41.50 d.108.1.1 95655 1lk2A 274 42.20 b.1.1.2,d.19.1.1 91056,91057 1q7hA 153 43.42 b.122.1.1,d.17.6.2 96042,96043 1zjkA 403 44.39 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1xipA 388 49.98 b.69.14.1 115360 1barA 140 51.62 b.42.1.1 25504 2obiA 183 52.61 1k94A 165 52.71 a.39.1.8 68333 1xreA 217 55.25 1sq9A 397 55.60 b.69.4.1 105889 1fzoA 274 55.66 b.1.1.2,d.19.1.1 60155,60156 1eaxA 241 55.95 b.47.1.2 64889 1sqwA 188 57.67 b.122.1.1,d.17.6.3 119033,119034 1on0A 158 60.65 d.108.1.1 87095 2hsiA 282 62.27 1q6zA 528 63.00 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2dq6A 870 63.01 1kjvA 284 63.18 b.1.1.2,d.19.1.1 77421,77422 3bn8A 128 66.14 1i4fA 275 66.18 b.1.1.2,d.19.1.1 61687,61688 1k5nA 276 67.38 b.1.1.2,d.19.1.1 77266,77267 1p3jA 217 67.66 c.37.1.1,g.41.2.1 94022,94023 1tiqA 180 67.87 d.108.1.1 107010 1je6A 275 68.50 b.1.1.2,d.19.1.1 71638,71639 1crzA 403 68.54 b.68.4.1,c.51.2.1 27629,33211 1eejA 216 69.85 c.47.1.9,d.17.3.1 33057,38071 1yiqA 689 70.02 2abwA 227 70.24 c.23.16.1 126535 2p5qA 170 71.27 2ofcA 142 72.02 1z45A 699 72.95 b.30.5.4,c.2.1.2 124427,124428 1kcgC 178 74.46 d.19.1.1 68440 1bfd 528 74.63 1zt1A 277 75.60 1xfuA 747 75.81 2fm8A 135 76.43 d.198.1.1 133767 1pvdA 537 77.87 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1j3mA 129 78.23 d.129.7.1 103836 1st9A 143 80.98 c.47.1.10 98987 1ukfA 188 81.73 d.3.1.10 99488 1vyrA 364 81.79 c.1.4.1 108906 1sfxA 109 82.60 a.4.5.50 105505 1extA 162 82.94 g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1a1nA 276 87.05 b.1.1.2,d.19.1.1 20755,38267 1y7yA 74 88.14 a.35.1.3 122729 3besR 250 89.36