# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2prvA 153 4.55e-19 2icgA 160 4.49e-15 2pagA 135 1.44e-14 1xl7A 612 0.8822 c.43.1.3,c.43.1.3 115438,115439 2j5aA 110 2.173 2abbA 364 5.671 c.1.4.1 126517 1bifA 469 6.870 c.37.1.7,c.60.1.4 31961,34003 1zjkA 403 7.379 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 3cnhA 200 7.723 2gtqA 867 8.017 2heuA 401 8.059 2v3gA 283 8.306 2dq6A 870 9.106 1vyrA 364 9.610 c.1.4.1 108906 1xipA 388 9.690 b.69.14.1 115360 2hoqA 241 9.95 1ryiA 382 10.58 c.3.1.2,d.16.1.3 118813,118814 1v93A 296 11.50 c.1.23.1 100532 2bibA 547 11.66 b.109.1.1,d.157.1.8 128581,128582 1to6A 371 12.86 c.141.1.1 107170 2gouA 365 13.14 1cqmA 101 13.38 d.58.14.1 39321 1xfuA 747 14.07 1lniA 96 17.28 d.1.1.2 74046 1hzoA 271 18.14 e.3.1.1 71092 1xfxA 777 18.49 1k32A 1045 18.59 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1louA 101 19.70 d.58.14.1 39323 2hsiA 282 19.92 1bif 469 21.00 1ydyA 356 21.07 c.1.18.3 123006 1svjA 156 23.13 d.220.1.1 106049 2z0xA 158 23.61 1t7vA 278 25.02 b.1.1.2,d.19.1.1 112302,112303 1s1mA 545 26.41 c.23.16.1,c.37.1.10 105201,105202 2djkA 133 27.43 c.47.1.2 131548 1k77A 260 27.48 c.1.15.5 72096 2p5qA 170 27.62 1zdrA 164 27.67 1r2jA 366 28.42 a.29.3.1,e.6.1.1 96869,96870 1t3tA 1303 28.52 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1nhpA 447 28.68 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1eejA 216 29.45 c.47.1.9,d.17.3.1 33057,38071 1p3jA 217 30.15 c.37.1.1,g.41.2.1 94022,94023 1jyoA 130 31.12 d.198.1.1 67483 1iysA 262 31.45 e.3.1.1 90723 1h2iA 209 31.56 d.50.1.3 76550 1v4pA 157 32.29 d.67.1.2 113533 2haiA 576 33.00 1bjtA 793 35.76 e.11.1.1 43249 1wdcB 156 35.90 a.39.1.5 17302 1p57B 255 36.17 b.47.1.2 94126 1i6aA 219 36.43 c.94.1.1 61827 2hi0A 240 38.29 1pvdA 537 40.19 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1q35A 320 40.21 c.94.1.1 95661 2exrA 524 40.74 1g5gA 481 41.19 f.12.1.1,h.3.2.1 65155,65156 1u04A 771 42.77 b.34.14.1,c.55.3.10 107539,107540 2scpA 174 43.98 a.39.1.5 17256 2pfeA 186 44.64 1riiA 265 44.99 c.60.1.1 111807 1lam 484 45.88 2halA 212 46.89 b.47.1.4 136289 1mlwA 301 46.95 d.178.1.1 79289 1el4A 195 48.85 a.39.1.5 59453 2om6A 235 51.50 1h99A 224 52.56 a.142.1.1,a.142.1.1 60814,60815 1extA 162 53.23 g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1ro0A 216 53.75 d.264.1.2 97664 1xd3A 230 54.65 d.3.1.6 115145 2hhjA 267 55.92 c.60.1.1 136497 1yf2A 425 57.08 d.287.1.2,d.287.1.2 123042,123043 1e4yA 214 58.95 c.37.1.1,g.41.2.1 31901,45181 2rghA 571 59.28 1vypX 364 59.58 c.1.4.1 108905 1bfd 528 60.12 1zjjA 263 60.44 1lokA 291 60.65 c.56.5.4 78122 1u4cA 349 60.90 b.69.4.2 107666 2p11A 231 63.88 1vhsA 175 64.40 d.108.1.1 100698 1mhyD 521 64.92 a.25.1.2 16780 2g95A 491 67.85 1ukfA 188 68.05 d.3.1.10 99488 1zbpA 273 68.41 e.61.1.1 124861 3bqcA 335 68.90 2puhA 286 71.78 1zdsA 336 72.61 b.6.1.3,b.6.1.3 124952,124953 1z70X 311 73.16 d.169.1.7 124581 1sqwA 188 73.86 b.122.1.1,d.17.6.3 119033,119034 1lk2A 274 75.02 b.1.1.2,d.19.1.1 91056,91057 1o7dD 282 75.15 2gdnA 267 76.20 2h8lA 252 76.30 1wpnA 188 76.34 c.107.1.1 114826 1omp 370 76.75 1ytvA 366 78.14 c.94.1.1 124016 1s4uX 407 78.36 b.69.4.1 112027 2q8nA 460 78.69 1vp8A 201 78.85 c.49.1.2 113947 1cf9A 753 79.04 c.23.16.3,e.5.1.1 31441,42815 1k9vF 201 79.16 c.23.16.1 68365 2hcfA 234 79.26 c.108.1.6 136333 1q87A 221 79.69 e.47.1.1 96192 1u1iA 392 79.99 c.2.1.3,d.81.1.3 107582,107583 2o0bA 450 81.69 1w61A 414 82.91 2bcfA 276 83.71 1a8y 367 85.72 1k5nA 276 85.80 b.1.1.2,d.19.1.1 77266,77267 1t3bA 211 86.06 c.47.1.9,d.17.3.1 106341,106342 1kuxA 207 86.10 d.108.1.1 73021 1r77A 103 86.73 1qyiA 384 86.84 c.108.1.13 96595 2ghaA 382 86.96 2citA 282 87.29 c.1.8.3 130499 1ro2A 216 88.13 d.264.1.2 97665