# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	1.06e-19		
2icgA	160	3.61e-17		
2pagA	135	2.56e-16		
2j5aA	110	1.442		
1cqmA	101	7.109	d.58.14.1	39321
1ryiA	382	9.907	c.3.1.2,d.16.1.3	118813,118814
1h8dH	260	9.96		
1xl7A	612	10.14	c.43.1.3,c.43.1.3	115438,115439
1louA	101	11.05	d.58.14.1	39323
2nruA	307	12.09		
2djkA	133	17.87	c.47.1.2	131548
1ro2A	216	18.27	d.264.1.2	97665
2abbA	364	18.37	c.1.4.1	126517
1j7nA	776	19.33	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1eaxA	241	19.47	b.47.1.2	64889
1h2iA	209	21.75	d.50.1.3	76550
1jyoA	130	23.70	d.198.1.1	67483
1zjkA	403	24.02	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1zrnA	232	24.90	c.108.1.1	43323
1pvdA	537	26.45	c.31.1.3,c.36.1.5,c.36.1.9	31737,31777,31778
1ro0A	216	28.90	d.264.1.2	97664
1t7vA	278	29.81	b.1.1.2,d.19.1.1	112302,112303
1vhsA	175	30.19	d.108.1.1	100698
1svjA	156	30.88	d.220.1.1	106049
2gtqA	867	32.65		
1jofA	365	36.13	b.69.10.1	71775
1z45A	699	37.94	b.30.5.4,c.2.1.2	124427,124428
1xreA	217	41.61		
2hsiA	282	46.00		
1k94A	165	46.33	a.39.1.8	68333
2c31A	568	48.11	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
2dy1A	665	51.48		
1barA	140	51.50	b.42.1.1	25504
1nexB	464	52.13	a.158.1.1,b.69.4.1	80443,80444
1on0A	158	55.05	d.108.1.1	87095
1q35A	320	57.13	c.94.1.1	95661
1vyrA	364	58.81	c.1.4.1	108906
1q6zA	528	59.78	c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657
1sqwA	188	63.17	b.122.1.1,d.17.6.3	119033,119034
2bvrH	252	64.63		
1sfxA	109	65.07	a.4.5.50	105505
1xfuA	747	66.31		
1os8A	223	67.64	b.47.1.1	93481
2cztA	167	67.69		
2cxnA	557	70.08		
1fzoA	274	70.52	b.1.1.2,d.19.1.1	60155,60156
1bfd	528	70.72		
2phcB	225	70.98		
2dq6A	870	73.88		
1lk2A	274	75.75	b.1.1.2,d.19.1.1	91056,91057
1rw1A	114	78.48	c.47.1.12	111945
1yvkA	163	80.02	d.108.1.1	124101
1q87A	221	80.86	e.47.1.1	96192
1p3jA	217	81.57	c.37.1.1,g.41.2.1	94022,94023
1tiqA	180	86.11	d.108.1.1	107010