# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	5.75e-19		
2icgA	160	2.97e-16		
2pagA	135	3.48e-15		
2j5aA	110	4.377		
1h8dH	260	7.490		
1ryiA	382	14.71	c.3.1.2,d.16.1.3	118813,118814
1louA	101	16.76	d.58.14.1	39323
2nruA	307	16.78		
1cqmA	101	17.26	d.58.14.1	39321
1xl7A	612	18.69	c.43.1.3,c.43.1.3	115438,115439
2djkA	133	19.71	c.47.1.2	131548
1eaxA	241	20.15	b.47.1.2	64889
2gtqA	867	21.65		
1xreA	217	21.71		
1gqpA	221	22.72	b.18.1.9	70372
2cztA	167	23.02		
1zjkA	403	24.71	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1k94A	165	26.74	a.39.1.8	68333
1h2iA	209	30.75	d.50.1.3	76550
2hsiA	282	38.25		
1barA	140	40.40	b.42.1.1	25504
3besR	250	41.36		
1xfxA	777	42.63		
1ro2A	216	43.44	d.264.1.2	97665
1zrnA	232	44.75	c.108.1.1	43323
2f5tX	233	47.36		
1tiqA	180	49.49	d.108.1.1	107010
1z45A	699	50.02	b.30.5.4,c.2.1.2	124427,124428
2bvrH	252	51.18		
1t7vA	278	55.05	b.1.1.2,d.19.1.1	112302,112303
2dq6A	870	55.07		
2obiA	183	60.18		
1p3jA	217	60.28	c.37.1.1,g.41.2.1	94022,94023
2dy1A	665	60.47		
1jofA	365	60.94	b.69.10.1	71775
1st9A	143	65.30	c.47.1.10	98987
1pvdA	537	67.36	c.31.1.3,c.36.1.5,c.36.1.9	31737,31777,31778
1j7nA	776	70.95	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1h99A	224	73.36	a.142.1.1,a.142.1.1	60814,60815
1yvkA	163	74.87	d.108.1.1	124101
1vhsA	175	76.08	d.108.1.1	100698
2ahqA	76	76.45		
1ggxA	223	77.92	d.22.1.1	38367
1nexB	464	78.40	a.158.1.1,b.69.4.1	80443,80444
1xfuA	747	79.04		
1svjA	156	84.37	d.220.1.1	106049