# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	3.69e-18		
2icgA	160	2.76e-15		
2pagA	135	2.92e-14		
2j5aA	110	4.052		
1xl7A	612	11.29	c.43.1.3,c.43.1.3	115438,115439
1louA	101	14.37	d.58.14.1	39323
1cqmA	101	14.98	d.58.14.1	39321
2gtqA	867	15.23		
1zrnA	232	15.41	c.108.1.1	43323
1zjkA	403	17.30	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2obiA	183	19.71		
1h8dH	260	20.28		
1st9A	143	23.45	c.47.1.10	98987
1xreA	217	26.02		
2nruA	307	28.27		
1ryiA	382	29.73	c.3.1.2,d.16.1.3	118813,118814
1ro2A	216	32.29	d.264.1.2	97665
2djkA	133	33.48	c.47.1.2	131548
1eaxA	241	34.38	b.47.1.2	64889
1svjA	156	37.75	d.220.1.1	106049
1barA	140	38.81	b.42.1.1	25504
1h2iA	209	39.03	d.50.1.3	76550
2dy1A	665	41.47		
1t7vA	278	42.53	b.1.1.2,d.19.1.1	112302,112303
1h99A	224	45.45	a.142.1.1,a.142.1.1	60814,60815
1z45A	699	54.83	b.30.5.4,c.2.1.2	124427,124428
1xipA	388	57.08	b.69.14.1	115360
1yvkA	163	57.85	d.108.1.1	124101
2hsiA	282	62.15		
1nexB	464	62.38	a.158.1.1,b.69.4.1	80443,80444
1j7nA	776	65.68	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1je6A	275	68.59	b.1.1.2,d.19.1.1	71638,71639
1vhsA	175	68.99	d.108.1.1	100698
2ahqA	76	71.77		
3besR	250	73.15		
1tiqA	180	73.95	d.108.1.1	107010
2dq6A	870	74.64		
1ro0A	216	74.72	d.264.1.2	97664
2p5qA	170	76.38		
1p3jA	217	77.51	c.37.1.1,g.41.2.1	94022,94023
1lk2A	274	78.41	b.1.1.2,d.19.1.1	91056,91057
2hi0A	240	78.48		
2abbA	364	78.54	c.1.4.1	126517
1kcgC	178	81.34	d.19.1.1	68440
3bn8A	128	82.14		
1k94A	165	82.63	a.39.1.8	68333
1xfuA	747	84.27		
2rcvA	202	86.38