# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	1.19e-17		
2icgA	160	4.87e-15		
2pagA	135	4.44e-14		
2j5aA	110	3.650		
1h8dH	260	10.69		
1louA	101	14.34	d.58.14.1	39323
1cqmA	101	15.58	d.58.14.1	39321
1xreA	217	16.34		
1h2iA	209	18.39	d.50.1.3	76550
2nruA	307	21.64		
1ryiA	382	23.26	c.3.1.2,d.16.1.3	118813,118814
1xl7A	612	27.39	c.43.1.3,c.43.1.3	115438,115439
1zrnA	232	28.43	c.108.1.1	43323
1zjkA	403	29.07	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1ro2A	216	29.51	d.264.1.2	97665
1eaxA	241	32.05	b.47.1.2	64889
2djkA	133	33.22	c.47.1.2	131548
1z45A	699	34.10	b.30.5.4,c.2.1.2	124427,124428
2gtqA	867	34.32		
1k94A	165	35.48	a.39.1.8	68333
1svjA	156	38.86	d.220.1.1	106049
1vhsA	175	41.42	d.108.1.1	100698
2obiA	183	42.44		
1st9A	143	45.67	c.47.1.10	98987
1gqpA	221	50.33	b.18.1.9	70372
1xfxA	777	55.74		
1xipA	388	55.87	b.69.14.1	115360
1ro0A	216	56.08	d.264.1.2	97664
1j7nA	776	58.37	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1tiqA	180	58.68	d.108.1.1	107010
2bibA	547	63.66	b.109.1.1,d.157.1.8	128581,128582
1h99A	224	63.93	a.142.1.1,a.142.1.1	60814,60815
1nexB	464	64.62	a.158.1.1,b.69.4.1	80443,80444
2cztA	167	64.81		
2rcvA	202	65.52		
1xfuA	747	66.62		
1zd1A	284	66.93		
2bvrH	252	70.07		
1on0A	158	70.18	d.108.1.1	87095
1p3jA	217	70.24	c.37.1.1,g.41.2.1	94022,94023
2hsiA	282	70.50		
1yvkA	163	71.03	d.108.1.1	124101
2ptmA	198	71.88		
1barA	140	72.19	b.42.1.1	25504
1z70X	311	74.35	d.169.1.7	124581
1q2yA	140	76.11	d.108.1.1	95655
1t7vA	278	80.98	b.1.1.2,d.19.1.1	112302,112303
3bn8A	128	81.17		
2f5tX	233	83.16		
1pvdA	537	83.48	c.31.1.3,c.36.1.5,c.36.1.9	31737,31777,31778
2dq6A	870	86.13		
1jofA	365	87.29	b.69.10.1	71775
1ixcA	294	89.29	a.4.5.37,c.94.1.1	83764,83765
1fzoA	274	89.78	b.1.1.2,d.19.1.1	60155,60156