# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	2.81e-16		
2icgA	160	1.66e-12		
2pagA	135	6.20e-12		
2phcB	225	20.62		
1crzA	403	28.52	b.68.4.1,c.51.2.1	27629,33211
1xreA	217	29.34		
1ro0A	216	31.19	d.264.1.2	97664
2hqsA	415	35.54	b.68.4.1,c.51.2.1	136662,136663
1ro2A	216	36.37	d.264.1.2	97665
2obiA	183	39.26		
1zjkA	403	42.42	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2p3nA	256	43.99		
1q6zA	528	44.35	c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657
2djkA	133	44.43	c.47.1.2	131548
1a5tA	334	48.99	a.80.1.1,c.37.1.20	18450,32423
1mmlA	265	50.02	e.8.1.2	43015
2j5aA	110	53.32		
2hfkA	319	54.77		
1f2vA	219	55.38	c.23.17.1	59627
2qflA	267	57.50		
2be1A	339	71.99		
2ph3A	245	74.03		
2trcP	217	74.59	c.47.1.6	33051
2eiyA	308	76.80		
1rw1A	114	79.63	c.47.1.12	111945
1zjjA	263	81.14		
1zrnA	232	81.84	c.108.1.1	43323
1mml	265	85.32		
1g0hA	252	85.78	e.7.1.1	60171
2eq6A	464	86.46		
2bkrA	212	86.55	d.3.1.7	128710
2ovlA	371	87.55		
1pjaA	302	87.65	c.69.1.13	94758
1nhpA	447	88.57	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
1pvdA	537	89.55	c.31.1.3,c.36.1.5,c.36.1.9	31737,31777,31778