# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	3.40e-19		
2icgA	160	5.48e-15		
2pagA	135	1.98e-14		
1zrnA	232	6.491	c.108.1.1	43323
1xreA	217	7.974		
1mmlA	265	14.35	e.8.1.2	43015
2djkA	133	15.02	c.47.1.2	131548
2j5aA	110	22.46		
1j7nA	776	27.41	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
2cztA	167	28.12		
2pl5A	366	28.59		
1ixcA	294	34.07	a.4.5.37,c.94.1.1	83764,83765
1zjkA	403	34.62	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1mml	265	44.15		
1nd6A	354	47.45	c.60.1.2	80407
1ggxA	223	50.41	d.22.1.1	38367
1iyeA	309	51.78	e.17.1.1	83786
1a0rB	340	52.32	b.69.4.1	27658
1q7hA	153	52.76	b.122.1.1,d.17.6.2	96042,96043
2phcB	225	58.11		
2rcvA	202	60.45		
2eiyA	308	62.77		
1ksiA	642	66.77	b.30.2.1,d.17.2.1,d.17.2.1	24408,38043,38044
1ro0A	216	68.55	d.264.1.2	97664
1yvkA	163	70.88	d.108.1.1	124101
1crzA	403	71.99	b.68.4.1,c.51.2.1	27629,33211
1i7qA	519	73.16	d.161.1.1	61901
1louA	101	74.86	d.58.14.1	39323
2hpaA	342	75.04	c.60.1.2	33985
1rw1A	114	76.13	c.47.1.12	111945
1cqmA	101	78.42	d.58.14.1	39321
1vhsA	175	78.84	d.108.1.1	100698
1os8A	223	84.08	b.47.1.1	93481
1yr0A	175	86.55	d.108.1.1	123905
2be1A	339	86.98		
1uisA	231	87.36	d.22.1.1	99431
1h9oA	112	87.92	d.93.1.1	60837
1jh6A	189	88.37	d.61.1.1	66707
1nrvA	105	89.22	d.93.1.1	86126