# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2prvA	153	9.47e-09		
2pagA	135	1.06e-08		
2icgA	160	1.00e-07		
2qneA	495	0.8329		
2vebA	195	10.81		
1zrnA	232	11.94	c.108.1.1	43323
1zelA	298	14.93		
2b8nA	429	16.98	c.118.1.1	128093
1xp2A	179	19.80		
1aj8A	371	22.07	a.103.1.1	18900
2dt5A	211	22.86	a.4.5.38,c.2.1.12	131708,131709
2q22A	139	24.17		
2abbA	364	25.54	c.1.4.1	126517
2cblA	305	25.86	a.39.1.7,a.48.1.1,d.93.1.1	17380,17774,40528
2j41A	207	27.85		
1yzbA	182	28.06		
2ahrA	259	30.44	a.100.1.10,c.2.1.6	126775,126776
1ujcA	161	32.63		
1l0iA	78	33.00	a.28.1.1	77643
2qhoB	53	35.37		
1vyrA	364	35.66	c.1.4.1	108906
2qjoA	341	37.18		
2vhhA	405	37.56		
1t6cA	315	38.72	c.55.1.8,c.55.1.8	106558,106559
1zatA	250	38.80	b.160.1.1,d.335.1.1	124845,124846
1tkeA	224	38.99	d.15.10.1,d.67.1.1	112470,112471
1q87A	221	39.20	e.47.1.1	96192
1rec	201	40.30		
1xizA	159	40.70	d.112.1.1	115375
1vgmA	378	42.10		
1s1eA	224	42.42	a.39.1.5	112007
1ixkA	315	43.23	c.66.1.38	90716
1btl	263	44.98		
2hi0A	240	45.44		
1rxqA	178	47.66	a.213.1.1	105118
2gb3A	409	47.72	c.67.1.1	134903
1t8kA	77	49.47	a.28.1.1	106666
2hoqA	241	51.26		
2qnwA	82	52.16		
3cerA	343	52.21		
2h4pA	394	52.43		
3buxB	329	52.62		
1zt2B	212	52.70	a.262.1.1	125625
2ehsA	77	53.08		
1gk8I	140	56.63	d.73.1.1	65242
1ir21	140	59.42		
1f5vA	240	60.10	d.90.1.1	40255
1jdwA	423	61.03	d.126.1.2	41129
1j5yA	187	61.27	a.4.5.1,d.94.2.1	71592,71593
1j9bA	141	63.88	c.47.1.12	66459
2p75A	177	64.05		
2gicA	422	64.18	a.260.1.1	135227
2d74B	148	66.34		
1f0xA	571	70.42	d.58.32.2,d.145.1.1	39483,41746
1owcA	427	71.13	a.103.1.1	104039
1v6tA	255	73.11	c.6.2.5	113550
1fx7A	230	73.11	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1y1xA	191	76.32	a.39.1.8	116374
1yvhA	329	76.69	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098
1vkuA	100	78.60	a.28.1.1	108690
2f51A	118	79.66		
1pbgA	468	80.01	c.1.8.4	28946
2gmwA	211	80.02		
1n3kA	130	80.06	a.77.1.4	79965
2z15A	130	80.26		
1bia	321	81.04		
1wdcB	156	81.04	a.39.1.5	17302
2i1sA	188	82.76		
2uuuA	584	84.34		
1vd3A	217	84.61		
2bl0B	145	84.66		
2vfjA	366	85.34		
1czaN	917	85.78	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33463,33464,33465,33466
2ifcA	385	85.86		
1lvaA	258	88.51	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279