Best Alignments for T0399

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2g2uB	2.2873e-10	2g2uB/T0399-2g2uB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.98.1.1
1jtgB	2.5455e-10	1jtgB/T0399-1jtgB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.98.1.1
2h36X	1.9763e+01	2h36X/T0399-2h36X-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o8xA	2.4199e+01	2o8xA/T0399-2o8xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h27A	3.3309e+01	2h27A/T0399-2h27A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.13.2
2oxgB	5.1510e+01	2oxgB/T0399-2oxgB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fbhA	5.3882e+01	2fbhA/T0399-2fbhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.28
1wdcB	6.2293e+01	1wdcB/T0399-1wdcB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
2qdrA	6.2575e+01	2qdrA/T0399-2qdrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vd6A	6.3257e+01	1vd6A/T0399-1vd6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.18.3
1fgjA	6.8267e+01	1fgjA/T0399-1fgjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2grjA	6.9071e+01	2grjA/T0399-2grjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3b71D	8.2674e+01	3b71D/T0399-3b71D-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wdvA	8.2937e+01	1wdvA/T0399-1wdvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.116.1.1
1t6sA	8.3639e+01	1t6sA/T0399-1t6sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.60 a.4.5.60
2iskA	8.4425e+01	2iskA/T0399-2iskA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a0mA	8.5079e+01	2a0mA/T0399-2a0mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.42.1.1
3bemA	8.6620e+01	3bemA/T0399-3bemA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vjfA	8.9023e+01	1vjfA/T0399-1vjfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.116.1.1
1j3wA	8.9655e+01	1j3wA/T0399-1j3wA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.110.7.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001