# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	6.76e-06	d.98.1.1	67267
2g2uB	165	7.83e-06	d.98.1.1	134541
2fyxA	143	1.098	d.58.57.1	134411
2o8xA	70	3.615		
2a6mA	155	3.762	d.58.57.1	126287
2f5gA	133	6.692	d.58.57.1	132991
2h36X	112	9.333		
1tygB	87	10.08	d.15.3.2	107455
1vmbA	140	11.92	d.58.14.1	113672
2h27A	73	11.94	a.4.13.2	135993
1r69	69	14.20		
1adrA	76	16.41	a.35.1.2	17042
2vjvA	159	18.34		
3bemA	218	23.02		
2ef8A	84	24.49		
1vfrA	218	24.51	d.90.1.1	40247
1utxA	66	25.05	a.35.1.3	108034
2zfyA	234	25.73		
2q88A	257	26.34		
2iorA	235	26.91		
2hbjA	410	27.10	a.60.8.4,c.55.3.5	136311,136312
1nstA	325	28.16	c.37.1.5	31951
2iwxA	214	28.91	d.122.1.1	137758
2fbhA	146	29.11	a.4.5.28	133245
2nrrA	159	29.63		
1or7A	194	30.74	a.4.13.2,a.177.1.1	87332,87333
2cxyA	125	31.46		
2bnmA	198	32.02	a.35.1.3,b.82.1.10	128835,128836
1z2nX	324	32.31		
1r69A	69	34.81	a.35.1.2	17028
3b40A	417	35.47		
1vkiA	181	36.01	d.116.1.1	108664
2b5aA	77	36.61	a.35.1.3	127882
2govA	195	37.01	d.60.1.4	135447
1y7yA	74	38.72	a.35.1.3	122729
2ppxA	99	40.46		
1yqgA	263	42.84		
2glxA	332	45.17		
1zud2	66	45.62		
2jspA	87	46.64		
1nox	205	46.91		
3b7hA	78	48.68		
1vjfA	180	49.18	d.116.1.1	100809
2hr3A	147	50.15	a.4.5.28	136678
1lliA	92	50.48	a.35.1.2	17025
1fs1B	141	50.83	a.157.1.1,d.42.1.1	19252,38664
1j1hA	144	51.36	b.111.1.1	77056
1lmb3	92	54.36		
2cro	71	55.66		
1lj9A	144	58.99	a.4.5.28	78035
2dqaA	124	60.89		
1jkoC	52	63.25	a.4.1.2	66809
2ccmA	191	65.11		
2hjsA	340	67.56	c.2.1.3,d.81.1.1	136547,136548
3bs3A	76	69.06		
2breA	219	70.03	d.122.1.1	128994
1m4tA	392	71.55	c.95.1.1,c.95.1.1	78617,78618
1vhtA	218	72.83	c.37.1.1	100700
1lnwA	147	73.17	a.4.5.28	78104
2iskA	230	73.56		
2freA	200	73.84	d.90.1.1	133985
1vj7A	393	75.16	a.211.1.1,d.218.1.8	100801,100802
2e01A	457	79.72		
2d5vA	164	80.65		
1sedA	117	83.96	a.219.1.1	105449
2ho3A	325	86.09		
2g8lA	299	86.75	e.50.1.1	134775
1fqvD	149	87.16	a.157.1.1,d.42.1.1	19263,38667
1necA	216	87.83	d.90.1.1	40249