# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	2.34e-06	d.98.1.1	67267
2g2uB	165	2.34e-06	d.98.1.1	134541
2fyxA	143	0.5209	d.58.57.1	134411
2a6mA	155	1.290	d.58.57.1	126287
2f5gA	133	4.429	d.58.57.1	132991
2h36X	112	4.952		
2o8xA	70	5.238		
1vmbA	140	6.052	d.58.14.1	113672
2vjvA	159	6.594		
1tygB	87	11.42	d.15.3.2	107455
2h27A	73	17.29	a.4.13.2	135993
1vfrA	218	19.66	d.90.1.1	40247
1z2nX	324	21.41		
1nstA	325	21.79	c.37.1.5	31951
3bemA	218	21.98		
1r69	69	24.21		
2q88A	257	26.17		
2nrrA	159	26.88		
2zfyA	234	27.51		
2iorA	235	29.96		
2ef8A	84	31.03		
1adrA	76	31.67	a.35.1.2	17042
2govA	195	32.49	d.60.1.4	135447
1nox	205	34.51		
1vkiA	181	37.31	d.116.1.1	108664
2fbhA	146	39.25	a.4.5.28	133245
3c1aA	315	41.11		
1or7A	194	42.22	a.4.13.2,a.177.1.1	87332,87333
1utxA	66	43.79	a.35.1.3	108034
1yqgA	263	45.80		
2ppxA	99	47.05		
2jspA	87	48.74		
1fs1B	141	49.85	a.157.1.1,d.42.1.1	19252,38664
2glxA	332	50.36		
2bnmA	198	51.47	a.35.1.3,b.82.1.10	128835,128836
1v63A	101	53.10	a.21.1.1	108391
2iwxA	214	53.36	d.122.1.1	137758
2o4uX	334	55.30		
1vk1A	242	57.32	d.268.1.2	108634
2cxyA	125	57.81		
2ccmA	191	61.14		
1vjfA	180	61.26	d.116.1.1	100809
2graA	277	62.42		
2ho3A	325	62.55		
1r69A	69	63.18	a.35.1.2	17028
2hbjA	410	63.74	a.60.8.4,c.55.3.5	136311,136312
2ismA	352	64.30		
2freA	200	65.92	d.90.1.1	133985
1jkoC	52	66.07	a.4.1.2	66809
2jmkA	111	68.01		
1zud2	66	70.04		
2b5aA	77	71.67	a.35.1.3	127882
3b40A	417	73.38		
1cp3A	277	75.23	c.17.1.1	30992
1ejjA	511	76.13	c.105.1.1,c.76.1.3	59422,59423
2iskA	230	76.66		
2hjsA	340	77.10	c.2.1.3,d.81.1.1	136547,136548
1b04A	318	78.08	d.142.2.2	41579
1ef4A	55	80.59	a.4.11.1	16272
2dqaA	124	81.16		
2scpA	174	81.35	a.39.1.5	17256
1vj7A	393	81.86	a.211.1.1,d.218.1.8	100801,100802
2d5vA	164	82.10		
1vhtA	218	82.83	c.37.1.1	100700
2hr3A	147	83.45	a.4.5.28	136678
1sedA	117	87.25	a.219.1.1	105449
2gqpA	236	87.75	d.122.1.1	135513